{"id":"https://openalex.org/W4390419130","doi":"https://doi.org/10.1109/iiai-aai59060.2023.00018","title":"Distance-Based Analysis of Positions in Amino Acid Sequences for Structural Proteins of SARS-CoV-2 Delta and Omicron Variants","display_name":"Distance-Based Analysis of Positions in Amino Acid Sequences for Structural Proteins of SARS-CoV-2 Delta and Omicron Variants","publication_year":2023,"publication_date":"2023-07-08","ids":{"openalex":"https://openalex.org/W4390419130","doi":"https://doi.org/10.1109/iiai-aai59060.2023.00018"},"language":"en","primary_location":{"id":"doi:10.1109/iiai-aai59060.2023.00018","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/iiai-aai59060.2023.00018","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 14th IIAI International Congress on Advanced Applied Informatics (IIAI-AAI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005229299","display_name":"Ryota Nagashima","orcid":"https://orcid.org/0009-0001-1259-7102"},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ryota Nagashima","raw_affiliation_strings":["Kyushu Institute of Technology Kawazu 680-4,Graduate School of Computer Science and Systems Engineering,Iizuka,Japan,820-8502"],"affiliations":[{"raw_affiliation_string":"Kyushu Institute of Technology Kawazu 680-4,Graduate School of Computer Science and Systems Engineering,Iizuka,Japan,820-8502","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093615105","display_name":"Uran Yamamoto","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Uran Yamamoto","raw_affiliation_strings":["Kyushu Institute of Technology Kawazu 680-4,Department of Artificial Intelligence,Iizuka,Japan,820-8502","UENO SEIKI Co., LTD"],"affiliations":[{"raw_affiliation_string":"Kyushu Institute of Technology Kawazu 680-4,Department of Artificial Intelligence,Iizuka,Japan,820-8502","institution_ids":["https://openalex.org/I207014233"]},{"raw_affiliation_string":"UENO SEIKI Co., LTD","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028174899","display_name":"Kouichi Hirata","orcid":"https://orcid.org/0000-0003-0814-8395"},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kouichi Hirata","raw_affiliation_strings":["Kyushu Institute of Technology Kawazu 680-4,Department of Artificial Intelligence,Iizuka,Japan,820-8502"],"affiliations":[{"raw_affiliation_string":"Kyushu Institute of Technology Kawazu 680-4,Department of Artificial Intelligence,Iizuka,Japan,820-8502","institution_ids":["https://openalex.org/I207014233"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005229299"],"corresponding_institution_ids":["https://openalex.org/I207014233"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.33536656,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"39","last_page":"44"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hamming-distance","display_name":"Hamming distance","score":0.720146894454956},{"id":"https://openalex.org/keywords/isoelectric-point","display_name":"Isoelectric point","score":0.579357385635376},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.5105234384536743},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.4618614614009857},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.44567185640335083},{"id":"https://openalex.org/keywords/substitution","display_name":"Substitution (logic)","score":0.43225157260894775},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.40374019742012024},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.383073627948761},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36670470237731934},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3619651794433594},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3297767639160156},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.32088178396224976},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.3189939558506012},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2518014907836914},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.22397390007972717},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.0851563811302185},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08495256304740906}],"concepts":[{"id":"https://openalex.org/C193319292","wikidata":"https://www.wikidata.org/wiki/Q272172","display_name":"Hamming distance","level":2,"score":0.720146894454956},{"id":"https://openalex.org/C96294017","wikidata":"https://www.wikidata.org/wiki/Q308708","display_name":"Isoelectric point","level":3,"score":0.579357385635376},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.5105234384536743},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.4618614614009857},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.44567185640335083},{"id":"https://openalex.org/C2778220771","wikidata":"https://www.wikidata.org/wiki/Q1522579","display_name":"Substitution (logic)","level":2,"score":0.43225157260894775},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.40374019742012024},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.383073627948761},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36670470237731934},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3619651794433594},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3297767639160156},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.32088178396224976},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.3189939558506012},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2518014907836914},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.22397390007972717},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0851563811302185},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08495256304740906},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iiai-aai59060.2023.00018","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/iiai-aai59060.2023.00018","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 14th IIAI International Congress on Advanced Applied Informatics (IIAI-AAI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1975233757","https://openalex.org/W2049562138","https://openalex.org/W2123179625","https://openalex.org/W2143210482","https://openalex.org/W2183446018","https://openalex.org/W3017680297","https://openalex.org/W3116885130","https://openalex.org/W4229009619","https://openalex.org/W4244908355","https://openalex.org/W4323240672","https://openalex.org/W7011740287"],"related_works":["https://openalex.org/W2891833269","https://openalex.org/W2375794184","https://openalex.org/W2379444625","https://openalex.org/W2393147081","https://openalex.org/W2575869988","https://openalex.org/W2394111001","https://openalex.org/W4205835550","https://openalex.org/W4308647020","https://openalex.org/W1587542831","https://openalex.org/W2370088286"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,29],"introduce":[4],"the":[5,17,35,40,46],"distances":[6,18,36],"between":[7],"positions":[8,41],"in":[9],"amino":[10],"acid":[11],"sequences":[12],"as":[13],"Hamming":[14],"distance":[15],"and":[16,26,37,52],"based":[19],"on":[20,42],"hydropathy":[21],"index,":[22],"isoelectric":[23],"point,":[24],"PAM250":[25],"BLOSUM50.":[27],"Then,":[28],"give":[30],"experimental":[31],"results":[32],"of":[33,38],"computing":[34],"analyzing":[39],"structural":[43],"proteins":[44],"with":[45],"spike":[47],"protein":[48],"substitution":[49],"for":[50],"Delta":[51],"Omicron":[53],"variants.":[54]},"counts_by_year":[],"updated_date":"2025-12-25T23:11:45.687758","created_date":"2025-10-10T00:00:00"}
