{"id":"https://openalex.org/W2038684680","doi":"https://doi.org/10.1109/iembs.2011.6091416","title":"A disease annotation study of gene signatures in a breast cancer microarray dataset","display_name":"A disease annotation study of gene signatures in a breast cancer microarray dataset","publication_year":2011,"publication_date":"2011-08-01","ids":{"openalex":"https://openalex.org/W2038684680","doi":"https://doi.org/10.1109/iembs.2011.6091416","mag":"2038684680","pmid":"https://pubmed.ncbi.nlm.nih.gov/22255596"},"language":"en","primary_location":{"id":"doi:10.1109/iembs.2011.6091416","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iembs.2011.6091416","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050285887","display_name":"Foivos Gypas","orcid":"https://orcid.org/0000-0002-7233-8794"},"institutions":[{"id":"https://openalex.org/I55741626","display_name":"Technical University of Crete","ror":"https://ror.org/03f8bz564","country_code":"GR","type":"education","lineage":["https://openalex.org/I55741626"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"F. Gypas","raw_affiliation_strings":["Department of Electronic and Computer Engineering, Technical University of Crete, Chania 73100, Greece","Department of Electronic and Computer Engineering, Technical University of Crete, Cha-nia 73100, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Technical University of Crete, Chania 73100, Greece","institution_ids":["https://openalex.org/I55741626"]},{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Technical University of Crete, Cha-nia 73100, Greece","institution_ids":["https://openalex.org/I55741626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086247449","display_name":"Ekaterini S. Bei","orcid":null},"institutions":[{"id":"https://openalex.org/I55741626","display_name":"Technical University of Crete","ror":"https://ror.org/03f8bz564","country_code":"GR","type":"education","lineage":["https://openalex.org/I55741626"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"E. S. Bei","raw_affiliation_strings":["Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece","Department of Electronic and Computer Engineering, Technical University of Crete, Cha-nia 73100, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece","institution_ids":["https://openalex.org/I55741626"]},{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Technical University of Crete, Cha-nia 73100, Greece","institution_ids":["https://openalex.org/I55741626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113661535","display_name":"Michalis Zervakis","orcid":null},"institutions":[{"id":"https://openalex.org/I55741626","display_name":"Technical University of Crete","ror":"https://ror.org/03f8bz564","country_code":"GR","type":"education","lineage":["https://openalex.org/I55741626"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"M. Zervakis","raw_affiliation_strings":["Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece","Department of Electronic and Computer Engineering, Technical University of Crete, Cha-nia 73100, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece","institution_ids":["https://openalex.org/I55741626"]},{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Technical University of Crete, Cha-nia 73100, Greece","institution_ids":["https://openalex.org/I55741626"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012956979","display_name":"Stelios Sfakianakis","orcid":"https://orcid.org/0000-0001-8424-4157"},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"S. Sfakianakis","raw_affiliation_strings":["Institute of Computer Science, Foundation for Research and Technology, Heraklion, Greece","Institute of Computer Science, Foundation for Research and Technology, Heraklion 71110, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Foundation for Research and Technology, Heraklion, Greece","institution_ids":["https://openalex.org/I8901234"]},{"raw_affiliation_string":"Institute of Computer Science, Foundation for Research and Technology, Heraklion 71110, Greece","institution_ids":["https://openalex.org/I8901234"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"415","issue":null,"first_page":"5551","last_page":"5554"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.820561408996582},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.6976481080055237},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6436040997505188},{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.5795825719833374},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.5532903075218201},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5413439869880676},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.5313525795936584},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.4790814518928528},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4559997618198395},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4192882180213928},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.38301730155944824},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.3446006774902344},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.30882012844085693},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27114051580429077},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2711116671562195},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.2603875994682312},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.19945582747459412},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.15912282466888428},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11705610156059265}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.820561408996582},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.6976481080055237},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6436040997505188},{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.5795825719833374},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.5532903075218201},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5413439869880676},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.5313525795936584},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4790814518928528},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4559997618198395},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4192882180213928},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.38301730155944824},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.3446006774902344},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30882012844085693},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27114051580429077},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2711116671562195},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.2603875994682312},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.19945582747459412},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.15912282466888428},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11705610156059265},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040081","descriptor_name":"Protein Array Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/iembs.2011.6091416","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iembs.2011.6091416","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},{"id":"pmid:22255596","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22255596","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.800000011920929}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W99004795","https://openalex.org/W610587551","https://openalex.org/W1480911578","https://openalex.org/W1525674613","https://openalex.org/W1783325304","https://openalex.org/W1964321121","https://openalex.org/W1973435266","https://openalex.org/W1985798079","https://openalex.org/W2020668337","https://openalex.org/W2042816516","https://openalex.org/W2046151919","https://openalex.org/W2058000102","https://openalex.org/W2087347434","https://openalex.org/W2117812871","https://openalex.org/W2128909638","https://openalex.org/W2128985829","https://openalex.org/W2135046866","https://openalex.org/W2139212933","https://openalex.org/W2141545183","https://openalex.org/W2143426320","https://openalex.org/W2145632240","https://openalex.org/W2163111859","https://openalex.org/W2163924299","https://openalex.org/W2165926532","https://openalex.org/W2490296215","https://openalex.org/W3159004246"],"related_works":["https://openalex.org/W112583468","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W2796636403","https://openalex.org/W4298030740","https://openalex.org/W2108949684","https://openalex.org/W2364565895","https://openalex.org/W1965976436","https://openalex.org/W2012655824","https://openalex.org/W2015700328"],"abstract_inverted_index":{"Breast":[0],"cancer":[1,64,100],"is":[2],"a":[3,72,81,87],"complex":[4],"disease":[5],"with":[6,71],"heterogeneity":[7],"between":[8],"patients":[9],"regarding":[10],"prognosis":[11,40],"and":[12,22,41,56,65,91],"treatment":[13],"response.":[14],"Recent":[15],"progress":[16],"in":[17],"advanced":[18],"molecular":[19],"biology":[20],"techniques":[21],"the":[23,33,67,77,92],"development":[24],"of":[25,35,43,83,98],"efficient":[26],"methods":[27],"for":[28,39,62],"database":[29],"mining":[30],"lead":[31],"to":[32,58],"discovery":[34],"promising":[36],"novel":[37],"biomarkers":[38],"prediction":[42],"breast":[44,63,99],"cancer.":[45],"In":[46],"this":[47],"paper,":[48],"we":[49],"applied":[50],"three":[51],"computational":[52],"algorithms":[53],"(RFE-LNW,":[54],"Lasso":[55],"FSMLP)":[57],"one":[59],"microarray":[60],"dataset":[61],"compared":[66],"obtained":[68],"gene":[69,94],"signatures":[70],"recently":[73],"described":[74],"disease-agnostic":[75],"tool,":[76],"Genotator.":[78],"We":[79],"identified":[80],"panel":[82],"152":[84],"genes":[85],"as":[86,95],"potential":[88],"prognostic":[89],"signature":[90],"ERRFI1":[93],"possible":[96],"biomarker":[97],"disease.":[101]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
