{"id":"https://openalex.org/W1971379635","doi":"https://doi.org/10.1109/iembs.2011.6090629","title":"Using semantic web technologies to manage complexity and change in biomedical data","display_name":"Using semantic web technologies to manage complexity and change in biomedical data","publication_year":2011,"publication_date":"2011-08-01","ids":{"openalex":"https://openalex.org/W1971379635","doi":"https://doi.org/10.1109/iembs.2011.6090629","mag":"1971379635","pmid":"https://pubmed.ncbi.nlm.nih.gov/22255145"},"language":"en","primary_location":{"id":"doi:10.1109/iembs.2011.6090629","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iembs.2011.6090629","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049799218","display_name":"Robert Stevens","orcid":"https://orcid.org/0000-0002-6038-9025"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"R. Stevens","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester, United Kingdom","[School of Computer Science, University of Manchester, Oxford Road, Manchester, United Kingdom]"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester, United Kingdom","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"[School of Computer Science, University of Manchester, Oxford Road, Manchester, United Kingdom]","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024899492","display_name":"Simon Jupp","orcid":"https://orcid.org/0000-0002-0643-3144"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. Jupp","raw_affiliation_strings":["School of Computer Science, University of manchester, Manchester, UK","[School of Computer Science, University of Manchester, Oxford Road, Manchester, United Kingdom]"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"[School of Computer Science, University of Manchester, Oxford Road, Manchester, United Kingdom]","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045393131","display_name":"Julie Klein","orcid":"https://orcid.org/0000-0002-3279-0559"},"institutions":[{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J. Klein","raw_affiliation_strings":["Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Toulouse, France","Institut National de la Sant\u00e9 et de la Recherche Me\u00b4dicale, Toulouse, France"],"affiliations":[{"raw_affiliation_string":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Toulouse, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut National de la Sant\u00e9 et de la Recherche Me\u00b4dicale, Toulouse, France","institution_ids":["https://openalex.org/I205747304"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009141968","display_name":"Joost P. Schanstra","orcid":"https://orcid.org/0000-0002-7471-372X"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I205747304","display_name":"Institut National Polytechnique de Toulouse","ror":"https://ror.org/033p9g875","country_code":"FR","type":"education","lineage":["https://openalex.org/I205747304","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J. Schanstra","raw_affiliation_strings":["Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Toulouse, France","Institut National de la Sant\u00e9 et de la Recherche Me\u00b4dicale, Toulouse, France"],"affiliations":[{"raw_affiliation_string":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Toulouse, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Institut National de la Sant\u00e9 et de la Recherche Me\u00b4dicale, Toulouse, France","institution_ids":["https://openalex.org/I205747304"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5049799218"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.06406585,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"100","issue":null,"first_page":"3708","last_page":"3711"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7896279096603394},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6505271196365356},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6171826124191284},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.5302711725234985},{"id":"https://openalex.org/keywords/semantic-technology","display_name":"Semantic technology","score":0.5166921615600586},{"id":"https://openalex.org/keywords/data-discovery","display_name":"Data discovery","score":0.47096019983291626},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38634759187698364},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.3177425265312195},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27687665820121765},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.18781602382659912}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7896279096603394},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6505271196365356},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6171826124191284},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.5302711725234985},{"id":"https://openalex.org/C6881194","wikidata":"https://www.wikidata.org/wiki/Q7449091","display_name":"Semantic technology","level":4,"score":0.5166921615600586},{"id":"https://openalex.org/C2777516300","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data discovery","level":3,"score":0.47096019983291626},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38634759187698364},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.3177425265312195},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27687665820121765},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.18781602382659912}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014553","descriptor_name":"Urinary Tract Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014553","descriptor_name":"Urinary Tract Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014553","descriptor_name":"Urinary Tract Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/iembs.2011.6090629","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iembs.2011.6090629","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society","raw_type":"proceedings-article"},{"id":"pmid:22255145","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22255145","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/17803b9e-6119-4adc-9af9-bac0172c0753","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/17803b9e-6119-4adc-9af9-bac0172c0753","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Stevens, R, Jupp, S, Klein, J & Schanstra, J 2011, Using Semantic Web Technologies to Manage Complexity and Change in Biomedical Data. in Proceeding of the 33rd Engineering in Medicine and Biology Society,EMBC, 2011 Annual International Conference of the IEEE. IEEE, pp. 3708-3711. https://doi.org/10.1109/IEMBS.2011.6090629.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.363.7971","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.363.7971","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.man.ac.uk/~stevensr/papers/embc2011.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1971676632","https://openalex.org/W1973415432","https://openalex.org/W2050554833","https://openalex.org/W2078022480","https://openalex.org/W2103017472","https://openalex.org/W2113142309","https://openalex.org/W2143795731","https://openalex.org/W2156222477","https://openalex.org/W2166131221"],"related_works":["https://openalex.org/W2779513816","https://openalex.org/W2025728896","https://openalex.org/W2013055153","https://openalex.org/W2189209437","https://openalex.org/W4252741181","https://openalex.org/W1985397115","https://openalex.org/W2111235920","https://openalex.org/W2068597994","https://openalex.org/W2069492413","https://openalex.org/W2297538506"],"abstract_inverted_index":{"Data":[0],"in":[1,79,94,161,170],"biomedicine":[2],"are":[3,118,150],"characterised":[4],"by":[5],"their":[6,29],"complexity,":[7],"volatility":[8,93],"and":[9,49,74,99,144,159,164],"heterogeneity.":[10],"It":[11,67],"is":[12,68,133],"these":[13,24,72,125],"characteristics,":[14],"rather":[15],"than":[16],"size":[17],"of":[18,53,57,71,89,106],"the":[19,43,46,51,55,69,75,80,84,95,104,109,142,157],"data,":[20,97],"that":[21,61,82,102,132],"make":[22,83,103],"managing":[23],"data":[25,33,38,73,81,85,107,117,135,140,163],"an":[26],"issue":[27],"for":[28],"analysis.":[30],"Any":[31],"significant":[32],"analysis":[34],"task":[35],"requires":[36],"gathering":[37],"from":[39,108,141],"many":[40],"places,":[41],"organising":[42],"relationships":[44],"between":[45],"data's":[47],"entities":[48],"overcoming":[50],"issues":[52],"recognising":[54],"nature":[56],"each":[58],"entity":[59],"such":[60],"this":[62,90,121,171],"organisation":[63],"can":[64],"take":[65],"place.":[66],"inter-relationship":[70],"semantic":[76],"confusion":[77],"inherent":[78],"complex.":[86],"On":[87],"top":[88],"we":[91,123,165],"have":[92],"domain's":[96],"knowledge":[98],"experimental":[100],"techniques":[101,137],"processing":[105],"domain":[110],"a":[111,130],"distinct":[112],"challenge,":[113],"even":[114],"before":[115],"those":[116],"organised.":[119],"In":[120],"article":[122],"describe":[124],"challenges":[126],"with":[127],"respect":[128],"to":[129,138,155],"project":[131],"using":[134,151],"mining":[136],"analyse":[139],"kidney":[143],"urinary":[145],"pathway":[146],"(KUP)":[147],"domain.":[148],"We":[149],"Semantic":[152],"Web":[153],"technologies":[154],"manage":[156],"complexity":[158],"change":[160],"our":[162,168],"report":[166],"on":[167],"experiences":[169],"project.":[172]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
