{"id":"https://openalex.org/W3169323089","doi":"https://doi.org/10.1109/ieeeconf51394.2020.9443496","title":"Spatiotemporal Tracking of SARS-CoV-2 Variants using informative subtype markers and association graphs","display_name":"Spatiotemporal Tracking of SARS-CoV-2 Variants using informative subtype markers and association graphs","publication_year":2020,"publication_date":"2020-11-01","ids":{"openalex":"https://openalex.org/W3169323089","doi":"https://doi.org/10.1109/ieeeconf51394.2020.9443496","mag":"3169323089"},"language":"en","primary_location":{"id":"doi:10.1109/ieeeconf51394.2020.9443496","is_oa":true,"landing_page_url":"https://doi.org/10.1109/ieeeconf51394.2020.9443496","pdf_url":"https://ieeexplore.ieee.org/ielx7/9443248/9443268/09443496.pdf","source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 54th Asilomar Conference on Signals, Systems, and Computers","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/9443248/9443268/09443496.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039106599","display_name":"Ananya Sen Gupta","orcid":"https://orcid.org/0000-0001-5255-8493"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ananya Sen Gupta","raw_affiliation_strings":["University of Iowa,Department of Electrical and Computer Engineering,Iowa City,IA,USA","Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, USA"],"affiliations":[{"raw_affiliation_string":"University of Iowa,Department of Electrical and Computer Engineering,Iowa City,IA,USA","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa City, IA, USA","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021677656","display_name":"Zhengqiao Zhao","orcid":"https://orcid.org/0000-0001-6873-6098"},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhengqiao Zhao","raw_affiliation_strings":["Drexel University,Department of Electrical and Computer Engineering,Philadelphia,PA,USA","Department of Electrical and Computer Engineering, Drexel University, Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"Drexel University,Department of Electrical and Computer Engineering,Philadelphia,PA,USA","institution_ids":["https://openalex.org/I72816309"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Drexel University, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I72816309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023224900","display_name":"Gail Rosen","orcid":"https://orcid.org/0000-0003-1763-5750"},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gail Rosen","raw_affiliation_strings":["Drexel University,Department of Electrical and Computer Engineering,Philadelphia,PA,USA","Department of Electrical and Computer Engineering, Drexel University, Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"Drexel University,Department of Electrical and Computer Engineering,Philadelphia,PA,USA","institution_ids":["https://openalex.org/I72816309"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Drexel University, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I72816309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5039106599"],"corresponding_institution_ids":["https://openalex.org/I126307644"],"apc_list":null,"apc_paid":null,"fwci":0.0256,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.43871598,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"42","issue":null,"first_page":"516","last_page":"519"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.7366028428077698},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5980212688446045},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.48773059248924255},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46917444467544556},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.4625150263309479},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45280152559280396},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39649301767349243},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.34786805510520935},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3056064248085022},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.26621100306510925},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17608073353767395}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.7366028428077698},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5980212688446045},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.48773059248924255},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46917444467544556},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.4625150263309479},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45280152559280396},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39649301767349243},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.34786805510520935},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3056064248085022},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26621100306510925},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17608073353767395},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ieeeconf51394.2020.9443496","is_oa":true,"landing_page_url":"https://doi.org/10.1109/ieeeconf51394.2020.9443496","pdf_url":"https://ieeexplore.ieee.org/ielx7/9443248/9443268/09443496.pdf","source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 54th Asilomar Conference on Signals, Systems, and Computers","raw_type":"proceedings-article"}],"best_oa_location":{"id":"doi:10.1109/ieeeconf51394.2020.9443496","is_oa":true,"landing_page_url":"https://doi.org/10.1109/ieeeconf51394.2020.9443496","pdf_url":"https://ieeexplore.ieee.org/ielx7/9443248/9443268/09443496.pdf","source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 54th Asilomar Conference on Signals, Systems, and Computers","raw_type":"proceedings-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1433134892","display_name":null,"funder_award_id":"ACI-154856","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1484936278","display_name":null,"funder_award_id":"1919691","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2256477278","display_name":null,"funder_award_id":"1936791","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2922803762","display_name":null,"funder_award_id":"45606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3355158854","display_name":null,"funder_award_id":"548562","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G367708065","display_name":null,"funder_award_id":"ACI-1548562","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3709464396","display_name":null,"funder_award_id":"-1548562","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3730782400","display_name":null,"funder_award_id":"1548562","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4897854425","display_name":null,"funder_award_id":"grant number ACI-1548562","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6241141806","display_name":null,"funder_award_id":"#1919691","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6799604229","display_name":null,"funder_award_id":"ACI-1548562.","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7260934811","display_name":null,"funder_award_id":"CI-1548562","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7404166632","display_name":"Bridges: From Communities and Data to Workflows and Insight","funder_award_id":"1445606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8729765517","display_name":null,"funder_award_id":"ACI-1445606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3169323089.pdf","grobid_xml":"https://content.openalex.org/works/W3169323089.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W2043701535","https://openalex.org/W2120299328","https://openalex.org/W2160378127","https://openalex.org/W2557328648","https://openalex.org/W2605343262","https://openalex.org/W2952045272","https://openalex.org/W3006857117","https://openalex.org/W3010020071","https://openalex.org/W3010373510","https://openalex.org/W3015444032","https://openalex.org/W3049628107","https://openalex.org/W3086943317","https://openalex.org/W3103754182","https://openalex.org/W6774101627"],"related_works":["https://openalex.org/W2396009657","https://openalex.org/W2799110842","https://openalex.org/W3032826521","https://openalex.org/W2391332606","https://openalex.org/W1462775415","https://openalex.org/W4229853287","https://openalex.org/W1535483699","https://openalex.org/W2008549446","https://openalex.org/W4399363637","https://openalex.org/W2333832190"],"abstract_inverted_index":{"Viral":[0],"subtyping":[1],"can":[2,22,80],"facilitate":[3],"visualization":[4,101],"and":[5,11,129],"modeling":[6],"of":[7,14,52,86],"the":[8,18,57,66],"geographic":[9],"distribution":[10],"temporal":[12],"dynamics":[13],"disease":[15],"spread.":[16],"Understanding":[17],"virus\u2019s":[19],"evolution":[20],"spatiotemporally":[21],"help":[23],"forensic":[24],"strategies.":[25],"We":[26,95],"have":[27],"identified":[28],"mutation":[29],"variation":[30],"within":[31],"SARS-CoV-2":[32],"sequences":[33],"via":[34],"an":[35],"entropy":[36],"measure":[37],"followed":[38],"by":[39],"frequency":[40],"analysis.":[41],"These":[42],"signatures,":[43],"Informative":[44],"Subtype":[45],"Markers":[46],"(ISMs),":[47],"define":[48],"a":[49,84,100],"compact":[50],"set":[51],"nucleotide":[53],"sites":[54],"that":[55,78],"characterize":[56],"most":[58,62],"variable":[59],"(and":[60],"thus":[61],"informative)":[63],"positions":[64],"in":[65],"viral":[67],"genomes":[68],"sequenced":[69],"from":[70],"different":[71,105,112,121,124],"individuals.":[72,113],"Using":[73],"these":[74],"ISMs,":[75],"we":[76,79,116],"show":[77],"use":[81],"them":[82],"for":[83,120],"variety":[85],"downstream":[87],"analyses,":[88],"such":[89,126],"as":[90,99,127],"comparing":[91],"countries\u2019":[92],"subtype":[93],"compositions.":[94],"present":[96],"association":[97],"graphs":[98],"tool":[102],"to":[103],"connect":[104],"ISMs":[106,119],"based":[107],"on":[108],"their":[109],"co-occurrence":[110],"across":[111,123],"In":[114],"particular,":[115],"investigate":[117],"dominant":[118],"locations,":[122],"factors":[125],"gender":[128],"age.":[130]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
