{"id":"https://openalex.org/W2569885336","doi":"https://doi.org/10.1109/iecon.2016.7793821","title":"Identification of protein-ligand binding site using multi-clustering and Support Vector Machine","display_name":"Identification of protein-ligand binding site using multi-clustering and Support Vector Machine","publication_year":2016,"publication_date":"2016-10-01","ids":{"openalex":"https://openalex.org/W2569885336","doi":"https://doi.org/10.1109/iecon.2016.7793821","mag":"2569885336"},"language":"en","primary_location":{"id":"doi:10.1109/iecon.2016.7793821","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iecon.2016.7793821","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IECON 2016 - 42nd Annual Conference of the IEEE Industrial Electronics Society","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://ira.lib.polyu.edu.hk/bitstream/10397/107252/1/Leung_Identification_Protein-Ligand_Binding.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051502105","display_name":"Ginny Y. Wong","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ginny Y. Wong","raw_affiliation_strings":["Dept of EIE, Centre for Signal Processing, Hung Hom, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of EIE, Centre for Signal Processing, Hung Hom, Hong Kong","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056524805","display_name":"F.H.F. Leung","orcid":"https://orcid.org/0000-0003-3921-7074"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Frank H.F. Leung","raw_affiliation_strings":["Dept of EIE, Centre for Signal Processing, Hung Hom, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of EIE, Centre for Signal Processing, Hung Hom, Hong Kong","institution_ids":[]}]},{"author_position":"last","author":{"id":null,"display_name":"Steve S.H. Ling","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Steve S.H. Ling","raw_affiliation_strings":["Faculty of Engg & IT, Centre for Health Technologies, NSW, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engg & IT, Centre for Health Technologies, NSW, Australia","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.18260379,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.8399384617805481},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7460030913352966},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.586803138256073},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5761812925338745},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.52949458360672},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4965441823005676},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.4728952944278717},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.45384448766708374},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38285011053085327},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34708791971206665},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33155393600463867},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2839428782463074},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13362661004066467},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12556669116020203}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.8399384617805481},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7460030913352966},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.586803138256073},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5761812925338745},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.52949458360672},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4965441823005676},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.4728952944278717},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.45384448766708374},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38285011053085327},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34708791971206665},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33155393600463867},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2839428782463074},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13362661004066467},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12556669116020203},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/iecon.2016.7793821","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iecon.2016.7793821","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IECON 2016 - 42nd Annual Conference of the IEEE Industrial Electronics Society","raw_type":"proceedings-article"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/107252","is_oa":true,"landing_page_url":"http://hdl.handle.net/10397/107252","pdf_url":"http://ira.lib.polyu.edu.hk/bitstream/10397/107252/1/Leung_Identification_Protein-Ligand_Binding.pdf","source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Paper"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/80681","is_oa":true,"landing_page_url":"http://hdl.handle.net/10453/80681","pdf_url":"https://opus.lib.uts.edu.au/bitstream/10453/80681/5/CEC16.pdf","source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Proceeding"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/71877","is_oa":false,"landing_page_url":"http://hdl.handle.net/10397/71877","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/73675","is_oa":false,"landing_page_url":"http://hdl.handle.net/10397/73675","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/107252","is_oa":true,"landing_page_url":"http://hdl.handle.net/10397/107252","pdf_url":"http://ira.lib.polyu.edu.hk/bitstream/10397/107252/1/Leung_Identification_Protein-Ligand_Binding.pdf","source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference Paper"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5799999833106995,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2569885336.pdf","grobid_xml":"https://content.openalex.org/works/W2569885336.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1517566065","https://openalex.org/W1571577887","https://openalex.org/W1627275720","https://openalex.org/W1965582988","https://openalex.org/W1967293793","https://openalex.org/W1977845138","https://openalex.org/W1979016574","https://openalex.org/W1985953075","https://openalex.org/W2004175162","https://openalex.org/W2021552823","https://openalex.org/W2026823642","https://openalex.org/W2031194866","https://openalex.org/W2058463742","https://openalex.org/W2063725620","https://openalex.org/W2066143642","https://openalex.org/W2072128103","https://openalex.org/W2091563009","https://openalex.org/W2097936772","https://openalex.org/W2104760790","https://openalex.org/W2108237355","https://openalex.org/W2112109058","https://openalex.org/W2123440974","https://openalex.org/W2127218421","https://openalex.org/W2128402268","https://openalex.org/W2128873747","https://openalex.org/W2130479394","https://openalex.org/W2132395520","https://openalex.org/W2138289501","https://openalex.org/W2138857742","https://openalex.org/W2164088236","https://openalex.org/W2166225722","https://openalex.org/W2176433868","https://openalex.org/W2606321545","https://openalex.org/W2997183031","https://openalex.org/W4231109964","https://openalex.org/W6678914141","https://openalex.org/W6680300913","https://openalex.org/W6685357932"],"related_works":["https://openalex.org/W2345184372","https://openalex.org/W3013515612","https://openalex.org/W2136184105","https://openalex.org/W2187500075","https://openalex.org/W2041399278","https://openalex.org/W2336974148","https://openalex.org/W2056016498","https://openalex.org/W3195168932","https://openalex.org/W2389470892","https://openalex.org/W1996541855"],"abstract_inverted_index":{"Multi-clustering":[0],"has":[1],"been":[2],"widely":[3],"used.":[4],"It":[5],"acts":[6],"as":[7],"a":[8],"pre-training":[9],"process":[10],"for":[11,33],"identifying":[12],"protein-ligand":[13],"binding":[14,34],"in":[15],"structure-based":[16],"drug":[17],"design.":[18],"Then,":[19],"the":[20,29],"Support":[21],"Vector":[22],"Machine":[23],"(SVM)":[24],"is":[25,49],"employed":[26],"to":[27,73],"classify":[28],"sites":[30],"most":[31],"likely":[32],"ligands.":[35],"Three":[36],"types":[37],"of":[38,71],"attributes":[39],"are":[40],"used,":[41],"namely":[42],"geometry-based,":[43],"energy-based,":[44],"and":[45,62],"sequence":[46],"conservation.":[47],"Comparison":[48],"made":[50],"on":[51],"198":[52],"drug-target":[53],"protein":[54],"complexes":[55],"with":[56],"LIGSITECSC,":[57],"SURFNET,":[58],"Fpocket,":[59],"Q-SiteFinder,":[60],"ConCavity,":[61],"MetaPocket.":[63],"The":[64],"results":[65],"show":[66],"an":[67],"improved":[68],"success":[69],"rate":[70],"up":[72],"86%.":[74]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2017-01-13T00:00:00"}
