{"id":"https://openalex.org/W2132706077","doi":"https://doi.org/10.1109/ideas.2002.1029677","title":"Fast filter-and-refine algorithms for subsequence selection","display_name":"Fast filter-and-refine algorithms for subsequence selection","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W2132706077","doi":"https://doi.org/10.1109/ideas.2002.1029677","mag":"2132706077"},"language":"en","primary_location":{"id":"doi:10.1109/ideas.2002.1029677","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ideas.2002.1029677","pdf_url":null,"source":{"id":"https://openalex.org/S4210202518","display_name":"Proceedings - International Database Engineering and Applications Symposium","issn_l":"1098-8068","issn":["1098-8068"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings International Database Engineering and Applications Symposium","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024892041","display_name":"Beng Chin Ooi","orcid":"https://orcid.org/0000-0003-4446-1100"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Beng Chin Ooi","raw_affiliation_strings":["Department Computer Science, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department Computer Science, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072606049","display_name":"HweeHwa Pang","orcid":"https://orcid.org/0000-0001-7266-5712"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hwee Hwa Pang","raw_affiliation_strings":["Lab for Information Technology, Singapore"],"affiliations":[{"raw_affiliation_string":"Lab for Information Technology, Singapore","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101533496","display_name":"Hao Wang","orcid":"https://orcid.org/0000-0003-2129-2148"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hao Wang","raw_affiliation_strings":["Department Computer Science, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department Computer Science, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012381970","display_name":"Limsoon Wong","orcid":"https://orcid.org/0000-0003-1241-5441"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Limsoon Wong","raw_affiliation_strings":["Lab for Information Technology, Singapore"],"affiliations":[{"raw_affiliation_string":"Lab for Information Technology, Singapore","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100402010","display_name":"Yu Cui","orcid":"https://orcid.org/0000-0002-1781-4735"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Cui Yu","raw_affiliation_strings":["Department Computer Science, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Department Computer Science, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5024892041"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":null,"apc_paid":null,"fwci":1.4039,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.85647952,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"243","last_page":"254"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subsequence","display_name":"Subsequence","score":0.9104033708572388},{"id":"https://openalex.org/keywords/bitmap","display_name":"Bitmap","score":0.8942595720291138},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6839959025382996},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6723747253417969},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6504642367362976},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.5696817636489868},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5663986802101135},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.5258886218070984},{"id":"https://openalex.org/keywords/bloom-filter","display_name":"Bloom filter","score":0.5067368149757385},{"id":"https://openalex.org/keywords/longest-increasing-subsequence","display_name":"Longest increasing subsequence","score":0.4725494086742401},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4549843370914459},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.45381730794906616},{"id":"https://openalex.org/keywords/database-index","display_name":"Database index","score":0.44620317220687866},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44105905294418335},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2184193730354309},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21656018495559692}],"concepts":[{"id":"https://openalex.org/C137877099","wikidata":"https://www.wikidata.org/wiki/Q1332977","display_name":"Subsequence","level":3,"score":0.9104033708572388},{"id":"https://openalex.org/C3115412","wikidata":"https://www.wikidata.org/wiki/Q1194708","display_name":"Bitmap","level":2,"score":0.8942595720291138},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6839959025382996},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6723747253417969},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6504642367362976},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.5696817636489868},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5663986802101135},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.5258886218070984},{"id":"https://openalex.org/C147224247","wikidata":"https://www.wikidata.org/wiki/Q885373","display_name":"Bloom filter","level":2,"score":0.5067368149757385},{"id":"https://openalex.org/C170006305","wikidata":"https://www.wikidata.org/wiki/Q4183855","display_name":"Longest increasing subsequence","level":4,"score":0.4725494086742401},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4549843370914459},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.45381730794906616},{"id":"https://openalex.org/C59276292","wikidata":"https://www.wikidata.org/wiki/Q580427","display_name":"Database index","level":3,"score":0.44620317220687866},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44105905294418335},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2184193730354309},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21656018495559692},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C34388435","wikidata":"https://www.wikidata.org/wiki/Q2267362","display_name":"Bounded function","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/ideas.2002.1029677","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ideas.2002.1029677","pdf_url":null,"source":{"id":"https://openalex.org/S4210202518","display_name":"Proceedings - International Database Engineering and Applications Symposium","issn_l":"1098-8068","issn":["1098-8068"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings International Database Engineering and Applications Symposium","raw_type":"proceedings-article"},{"id":"pmh:oai:ink.library.smu.edu.sg:sis_research-2143","is_oa":false,"landing_page_url":"https://ink.library.smu.edu.sg/cgi/viewcontent.cgi?article=2143&amp;amp;context=sis_research","pdf_url":null,"source":{"id":"https://openalex.org/S4377196871","display_name":"Institutional Knowledge (InK) - Institutional Knowledge at Singapore Management University (Singapore Management University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79891267","host_organization_name":"Singapore Management University","host_organization_lineage":["https://openalex.org/I79891267"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://doi.ieeecomputersociety.org/10.1109/IDEAS.2002.1029677","raw_type":"Conference Proceeding Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W277606711","https://openalex.org/W1529615245","https://openalex.org/W1541459201","https://openalex.org/W1595419937","https://openalex.org/W1967983783","https://openalex.org/W1970026646","https://openalex.org/W1972418517","https://openalex.org/W1981409766","https://openalex.org/W1985108724","https://openalex.org/W1990413869","https://openalex.org/W1992580876","https://openalex.org/W1995303482","https://openalex.org/W2016219933","https://openalex.org/W2045821558","https://openalex.org/W2052899946","https://openalex.org/W2054739439","https://openalex.org/W2055043387","https://openalex.org/W2059513841","https://openalex.org/W2071380243","https://openalex.org/W2111967617","https://openalex.org/W2117019496","https://openalex.org/W2121252285","https://openalex.org/W2128061541","https://openalex.org/W2134826720","https://openalex.org/W2143991273","https://openalex.org/W2147270764","https://openalex.org/W2151135734","https://openalex.org/W2154765457","https://openalex.org/W2158714788","https://openalex.org/W2533248932"],"related_works":["https://openalex.org/W2118491900","https://openalex.org/W2367834236","https://openalex.org/W2155928473","https://openalex.org/W4248408214","https://openalex.org/W2199640993","https://openalex.org/W2495090380","https://openalex.org/W2579707772","https://openalex.org/W2584859357","https://openalex.org/W2115440939","https://openalex.org/W2941086882"],"abstract_inverted_index":{"Large":[0],"sequence":[1,21,57,71],"databases,":[2],"such":[3],"as":[4],"protein,":[5],"DNA":[6,56],"and":[7,67,93,104],"gene":[8],"sequences":[9],"in":[10,54,98],"biology,":[11],"are":[12,31,40,96],"becoming":[13],"increasingly":[14],"common.":[15],"An":[16],"important":[17],"operation":[18],"on":[19],"a":[20,36,45,61,73,122],"database":[22],"is":[23,83,112],"approximate":[24,51],"subsequence":[25,52],"matching,":[26],"where":[27],"all":[28],"subsequences":[29],"that":[30,48,108],"within":[32],"some":[33],"distance":[34],"from":[35],"given":[37],"query":[38,78],"string":[39],"retrieved.":[41],"This":[42],"paper":[43],"proposes":[44],"filter-and-refine":[46],"algorithm":[47],"enables":[49],"efficient":[50],"matching":[53],"large":[55],"databases.":[58],"It":[59],"employs":[60],"bitmap":[62,81],"indexing":[63],"structure":[64],"to":[65,85],"condense":[66],"encode":[68],"each":[69],"data":[70],"into":[72],"shorter":[74],"index":[75,82],"sequence.":[76],"During":[77],"processing,":[79],"the":[80,90,99,109],"used":[84],"filter":[86],"out":[87],"most":[88],"of":[89,114],"irrelevant":[91],"subsequences,":[92],"false":[94],"positives":[95],"removed":[97],"final":[100],"refinement":[101],"step.":[102],"Analytical":[103],"experimental":[105],"studies":[106],"show":[107],"proposed":[110],"strategy":[111],"capable":[113],"reducing":[115],"response":[116],"time":[117],"substantially":[118],"while":[119],"incurring":[120],"only":[121],"small":[123],"space":[124],"overhead.":[125]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
