{"id":"https://openalex.org/W2062813113","doi":"https://doi.org/10.1109/ictc.2010.5674772","title":"Unbiased mining tool of repetitive elements and their arrangement structure for large size genomes","display_name":"Unbiased mining tool of repetitive elements and their arrangement structure for large size genomes","publication_year":2010,"publication_date":"2010-11-01","ids":{"openalex":"https://openalex.org/W2062813113","doi":"https://doi.org/10.1109/ictc.2010.5674772","mag":"2062813113"},"language":"en","primary_location":{"id":"doi:10.1109/ictc.2010.5674772","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ictc.2010.5674772","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 International Conference on Information and Communication Technology Convergence (ICTC)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030236221","display_name":"Woochan Kim","orcid":"https://orcid.org/0000-0002-4908-4036"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Woo-Chan Kim","raw_affiliation_strings":["Korea Advanced Institute of Science and Technology, Daejeon, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korea Advanced Institute of Science and Technology, Daejeon, South Korea","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073236857","display_name":"Kang Hoon Lee","orcid":"https://orcid.org/0000-0001-7520-9261"},"institutions":[{"id":"https://openalex.org/I1332596392","display_name":"Shriners Hospitals for Children - Erie","ror":"https://ror.org/02gffk937","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1332596392","https://openalex.org/I4210144267"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kang-Hoon Lee","raw_affiliation_strings":["Shriners Hospitals for Children - Erie, Erie, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shriners Hospitals for Children - Erie, Erie, United States","institution_ids":["https://openalex.org/I1332596392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108471067","display_name":"Kyung-Seop Shin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kyung-Seop Shin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024454539","display_name":"Ri-Na You","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ri-Na You","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011588891","display_name":"HyeonSeok Shin","orcid":"https://orcid.org/0000-0001-7618-035X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hyeon-Seok Shin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076616481","display_name":"Youngkwan Lee","orcid":"https://orcid.org/0000-0002-2076-2219"},"institutions":[{"id":"https://openalex.org/I1332596392","display_name":"Shriners Hospitals for Children - Erie","ror":"https://ror.org/02gffk937","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1332596392","https://openalex.org/I4210144267"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Young-Kwan Lee","raw_affiliation_strings":["Shriners Hospitals for Children - Erie, Erie, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shriners Hospitals for Children - Erie, Erie, United States","institution_ids":["https://openalex.org/I1332596392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101408880","display_name":"Kiho Cho","orcid":"https://orcid.org/0000-0001-6067-9447"},"institutions":[{"id":"https://openalex.org/I1332596392","display_name":"Shriners Hospitals for Children - Erie","ror":"https://ror.org/02gffk937","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1332596392","https://openalex.org/I4210144267"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kiho Cho","raw_affiliation_strings":["Shriners Hospitals for Children - Erie, Erie, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shriners Hospitals for Children - Erie, Erie, United States","institution_ids":["https://openalex.org/I1332596392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000853218","display_name":"Dong\u2010Ho Cho","orcid":"https://orcid.org/0000-0001-9849-4392"},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Dong-Ho Cho","raw_affiliation_strings":["Korea Advanced Institute of Science and Technology, Daejeon, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korea Advanced Institute of Science and Technology, Daejeon, South Korea","institution_ids":["https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"513","last_page":"514"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7599143981933594},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.6691347360610962},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6176939010620117},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5858103036880493},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4897780418395996},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.48015207052230835},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.47605013847351074},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4335169792175293},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36661434173583984},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24216589331626892},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21976909041404724},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.13847145438194275}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7599143981933594},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.6691347360610962},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6176939010620117},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5858103036880493},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4897780418395996},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.48015207052230835},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.47605013847351074},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4335169792175293},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36661434173583984},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24216589331626892},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21976909041404724},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.13847145438194275},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ictc.2010.5674772","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ictc.2010.5674772","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 International Conference on Information and Communication Technology Convergence (ICTC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1578516052","https://openalex.org/W1758136244","https://openalex.org/W1987493079","https://openalex.org/W2057602838","https://openalex.org/W2122954888","https://openalex.org/W2127230663","https://openalex.org/W6638003879"],"related_works":["https://openalex.org/W2046435967","https://openalex.org/W4231775656","https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W1969895229","https://openalex.org/W2108497208","https://openalex.org/W2012254260","https://openalex.org/W2364503270","https://openalex.org/W2409743480"],"abstract_inverted_index":{"Genes":[0],"are":[1],"reported":[2],"to":[3],"constitute":[4],"only":[5],"2~3%":[6],"of":[7,20,22,34,57,80,90,103],"the":[8,43,77,91,118],"human":[9,23,92],"genome,":[10],"whereas":[11],"repetitive":[12],"elements":[13],"(REs)":[14],"make":[15],"up":[16],"a":[17,52,111,114],"large":[18,60],"portion":[19],"genomes":[21],"and":[24,50],"other":[25],"eukaryotes.":[26],"However,":[27],"existing":[28],"algorithms":[29],"or":[30],"tools":[31],"for":[32,54,59,76,113],"identification":[33],"REs":[35,58],"as":[36,38],"well":[37],"biological":[39],"researches":[40],"focus":[41],"on":[42],"known":[44],"specific":[45],"REs.":[46],"Thus,":[47],"we":[48],"design":[49],"implement":[51],"tool":[53],"unbiased":[55],"mining":[56],"size":[61,79],"genomes,":[62],"called":[63],"REMiner,":[64],"in":[65],"this":[66],"paper.":[67],"REMiner":[68],"provides":[69],"fast":[70],"computation":[71],"with":[72],"low":[73],"memory":[74],"usage":[75],"huge":[78],"input":[81],"genomic":[82],"data.":[83],"We":[84],"show":[85],"some":[86],"interesting":[87],"repeat":[88],"patterns":[89],"chromosomes,":[93],"which":[94],"have":[95],"not":[96],"yet":[97],"been":[98],"reported.":[99],"This":[100],"chromosome-wide":[101],"survey":[102],"complex,":[104],"but":[105],"highly-ordered":[106],"RE":[107],"array,":[108],"will":[109],"provide":[110],"foundation":[112],"novel":[115],"investigation":[116],"into":[117],"genome.":[119]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
