{"id":"https://openalex.org/W2128789673","doi":"https://doi.org/10.1109/icsmc.2007.4413572","title":"Identify the gene positions of methylated DNA with a database approach","display_name":"Identify the gene positions of methylated DNA with a database approach","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W2128789673","doi":"https://doi.org/10.1109/icsmc.2007.4413572","mag":"2128789673"},"language":"en","primary_location":{"id":"doi:10.1109/icsmc.2007.4413572","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icsmc.2007.4413572","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE International Conference on Systems, Man and Cybernetics","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043048443","display_name":"Wenyi Bi","orcid":null},"institutions":[{"id":"https://openalex.org/I49631817","display_name":"Cheyney University of Pennsylvania","ror":"https://ror.org/02nckwn80","country_code":"US","type":"education","lineage":["https://openalex.org/I49631817"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Wenyi Bi","raw_affiliation_strings":["Computer Science Department, Cheyney University of Pennsylvania, Cheyney, PA, USA","Cheyney Univ. of Pennsylvania, Cheyney"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Cheyney University of Pennsylvania, Cheyney, PA, USA","institution_ids":["https://openalex.org/I49631817"]},{"raw_affiliation_string":"Cheyney Univ. of Pennsylvania, Cheyney","institution_ids":["https://openalex.org/I49631817"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111934830","display_name":"John J. Dunn","orcid":null},"institutions":[{"id":"https://openalex.org/I200870766","display_name":"Brookhaven National Laboratory","ror":"https://ror.org/02ex6cf31","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I200870766","https://openalex.org/I39565521","https://openalex.org/I4210142672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Dunn","raw_affiliation_strings":["Brookhaven National Laboratory, Biology Department, US DOE, USA","Biology Department, Brookhaven National Laboratory, U.S. DOE., USA"],"affiliations":[{"raw_affiliation_string":"Brookhaven National Laboratory, Biology Department, US DOE, USA","institution_ids":["https://openalex.org/I200870766"]},{"raw_affiliation_string":"Biology Department, Brookhaven National Laboratory, U.S. DOE., USA","institution_ids":["https://openalex.org/I200870766"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091731580","display_name":"S. McCorkle","orcid":"https://orcid.org/0000-0003-1126-4071"},"institutions":[{"id":"https://openalex.org/I200870766","display_name":"Brookhaven National Laboratory","ror":"https://ror.org/02ex6cf31","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I200870766","https://openalex.org/I39565521","https://openalex.org/I4210142672"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean McCorkle","raw_affiliation_strings":["Brookhaven National Laboratory, Biology Department, US DOE, USA","Biology Department, Brookhaven National Laboratory, U.S. DOE., USA"],"affiliations":[{"raw_affiliation_string":"Brookhaven National Laboratory, Biology Department, US DOE, USA","institution_ids":["https://openalex.org/I200870766"]},{"raw_affiliation_string":"Biology Department, Brookhaven National Laboratory, U.S. DOE., USA","institution_ids":["https://openalex.org/I200870766"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103554366","display_name":"Reginald Gabriel","orcid":null},"institutions":[{"id":"https://openalex.org/I49631817","display_name":"Cheyney University of Pennsylvania","ror":"https://ror.org/02nckwn80","country_code":"US","type":"education","lineage":["https://openalex.org/I49631817"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Reginald Gabriel","raw_affiliation_strings":["Computer Science Department, Cheyney University of Pennsylvania, Cheyney, PA, USA","Computer Science Department, Cheyney University of Pennsylvania, 19319, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Cheyney University of Pennsylvania, Cheyney, PA, USA","institution_ids":["https://openalex.org/I49631817"]},{"raw_affiliation_string":"Computer Science Department, Cheyney University of Pennsylvania, 19319, USA","institution_ids":["https://openalex.org/I49631817"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054189021","display_name":"Walter H. Lewis","orcid":null},"institutions":[{"id":"https://openalex.org/I49631817","display_name":"Cheyney University of Pennsylvania","ror":"https://ror.org/02nckwn80","country_code":"US","type":"education","lineage":["https://openalex.org/I49631817"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Walter Lewis","raw_affiliation_strings":["Computer Science Department, Cheyney University of Pennsylvania, Cheyney, PA, USA","Computer Science Department, Cheyney University of Pennsylvania, 19319, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Cheyney University of Pennsylvania, Cheyney, PA, USA","institution_ids":["https://openalex.org/I49631817"]},{"raw_affiliation_string":"Computer Science Department, Cheyney University of Pennsylvania, 19319, USA","institution_ids":["https://openalex.org/I49631817"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5043048443"],"corresponding_institution_ids":["https://openalex.org/I49631817"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1321865,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"119","issue":null,"first_page":"1500","last_page":"1505"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11928","display_name":"Genetic Syndromes and Imprinting","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9787999987602234,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7750450968742371},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.7329081892967224},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5486937761306763},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.529737114906311},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.49892210960388184},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4855806231498718},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.44069796800613403},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4269101619720459},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41670462489128113},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40504395961761475},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3217862844467163},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1350502371788025}],"concepts":[{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7750450968742371},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.7329081892967224},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5486937761306763},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.529737114906311},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.49892210960388184},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4855806231498718},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.44069796800613403},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4269101619720459},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41670462489128113},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40504395961761475},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3217862844467163},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1350502371788025}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/icsmc.2007.4413572","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icsmc.2007.4413572","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE International Conference on Systems, Man and Cybernetics","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.330.495","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.330.495","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.walsh.edu/uploads/DNAMethylationDBApproachSMCfinal-8263.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1862973715","https://openalex.org/W1980303046","https://openalex.org/W1998176194","https://openalex.org/W2042473783","https://openalex.org/W2084748297","https://openalex.org/W2106341289","https://openalex.org/W2116002669","https://openalex.org/W2121417064","https://openalex.org/W2123236344","https://openalex.org/W2130919037","https://openalex.org/W2135025419","https://openalex.org/W2152497434","https://openalex.org/W2168783124","https://openalex.org/W6680115299"],"related_works":["https://openalex.org/W2902329290","https://openalex.org/W2169344098","https://openalex.org/W2139872319","https://openalex.org/W2052355316","https://openalex.org/W2046964473","https://openalex.org/W2107880877","https://openalex.org/W2151182744","https://openalex.org/W2921336251","https://openalex.org/W2944524138","https://openalex.org/W2024490794"],"abstract_inverted_index":{"Determining":[0],"the":[1,8],"global":[2],"pattern":[3],"of":[4,19,24,79,96],"DNA":[5],"methylation,":[6],"or":[7],"methylome":[9],"and":[10,51],"its":[11,25],"variation":[12],"in":[13,64],"cells":[14],"has":[15],"become":[16],"an":[17,29],"area":[18],"considerable":[20],"interest":[21],"primarily":[22],"because":[23],"potential":[26],"use":[27],"as":[28],"early":[30],"diagnostic":[31],"biomarker":[32],"for":[33,91],"cancers.":[34],"Genome":[35],"survey":[36],"techniques":[37],"are":[38],"now":[39],"being":[40],"used":[41],"to":[42,56,98],"identify":[43],"heavily":[44],"methylated":[45],"regions":[46],"on":[47],"a":[48,54,65,73],"massive":[49],"scale":[50,93],"there":[52],"is":[53],"need":[55],"correlate":[57],"this":[58,69],"data":[59],"with":[60,85],"focused":[61],"biomedical":[62],"information":[63],"high-throughput":[66],"manner.":[67],"Towards":[68],"end,":[70],"we":[71],"present":[72],"database":[74],"which":[75,89],"combines":[76],"genomic":[77],"location":[78],"methylation":[80],"sites,":[81],"genes,":[82],"CpG":[83],"islands":[84],"specialized":[86],"genetic-ontological":[87],"resources":[88],"allow":[90],"large":[92],"comprehensive":[94],"presentations":[95],"utility":[97],"researchers.":[99]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
