{"id":"https://openalex.org/W2170459633","doi":"https://doi.org/10.1109/icsmc.2004.1398275","title":"Computing through scientific abstractions in SysBioPSE","display_name":"Computing through scientific abstractions in SysBioPSE","publication_year":2005,"publication_date":"2005-04-06","ids":{"openalex":"https://openalex.org/W2170459633","doi":"https://doi.org/10.1109/icsmc.2004.1398275","mag":"2170459633"},"language":"en","primary_location":{"id":"doi:10.1109/icsmc.2004.1398275","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icsmc.2004.1398275","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2004 IEEE International Conference on Systems, Man and Cybernetics (IEEE Cat. No.04CH37583)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073647309","display_name":"G. Chin","orcid":"https://orcid.org/0000-0002-9546-3408"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"G. Chin","raw_affiliation_strings":["Fundamental Systems Division, Pacific Northwest National Laboratory, Richland, WA, USA"],"affiliations":[{"raw_affiliation_string":"Fundamental Systems Division, Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054903654","display_name":"Eric Stephan","orcid":"https://orcid.org/0000-0002-8155-6806"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E.G. Stephan","raw_affiliation_strings":["Fundamental Systems Division, Pacific Northwest National Laboratory, Richland, WA, USA"],"affiliations":[{"raw_affiliation_string":"Fundamental Systems Division, Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064674784","display_name":"Deborah K. Gracio","orcid":"https://orcid.org/0000-0003-0512-5630"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D.K. Gracio","raw_affiliation_strings":["Fundamental Systems Division, Pacific Northwest National Laboratory, Richland, WA, USA"],"affiliations":[{"raw_affiliation_string":"Fundamental Systems Division, Pacific Northwest National Laboratory, Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5073647309"],"corresponding_institution_ids":["https://openalex.org/I142606810"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.24130257,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"1","issue":null,"first_page":"70","last_page":"75"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9508000016212463,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7532024383544922},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6197391748428345},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.5919752717018127},{"id":"https://openalex.org/keywords/modelling-biological-systems","display_name":"Modelling biological systems","score":0.503602921962738},{"id":"https://openalex.org/keywords/scientific-discovery","display_name":"Scientific discovery","score":0.43910908699035645},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.4075261354446411},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.30507951974868774},{"id":"https://openalex.org/keywords/cognitive-science","display_name":"Cognitive science","score":0.25287777185440063},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19279983639717102},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.11182644963264465},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08128449320793152}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7532024383544922},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6197391748428345},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.5919752717018127},{"id":"https://openalex.org/C137866125","wikidata":"https://www.wikidata.org/wiki/Q4299308","display_name":"Modelling biological systems","level":3,"score":0.503602921962738},{"id":"https://openalex.org/C2984917352","wikidata":"https://www.wikidata.org/wiki/Q12772819","display_name":"Scientific discovery","level":2,"score":0.43910908699035645},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.4075261354446411},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.30507951974868774},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.25287777185440063},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19279983639717102},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.11182644963264465},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08128449320793152},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icsmc.2004.1398275","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icsmc.2004.1398275","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2004 IEEE International Conference on Systems, Man and Cybernetics (IEEE Cat. No.04CH37583)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320337547","display_name":"Laboratory Directed Research and Development","ror":"https://ror.org/01e41cf67"},{"id":"https://openalex.org/F4320338354","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W47345829","https://openalex.org/W1535260640","https://openalex.org/W1575073588","https://openalex.org/W1992178984","https://openalex.org/W2010581638","https://openalex.org/W2033162758","https://openalex.org/W2097480163","https://openalex.org/W6601952667","https://openalex.org/W6632078289"],"related_works":["https://openalex.org/W4386563820","https://openalex.org/W631732704","https://openalex.org/W2155261113","https://openalex.org/W2064988479","https://openalex.org/W1748979965","https://openalex.org/W3199870583","https://openalex.org/W4254550161","https://openalex.org/W1497779830","https://openalex.org/W2315680351","https://openalex.org/W207829213"],"abstract_inverted_index":{"At":[0],"Pacific":[1],"Northwest":[2],"National":[3],"Laboratory,":[4],"we":[5,48],"are":[6,21,92,99],"researching":[7],"and":[8,15,31,36,80,89,103,107,115,121],"developing":[9],"scientific":[10,59,87,111],"computing":[11],"environments":[12],"for":[13,19,71],"biologists":[14,25,77],"bioinformaticists.":[16],"Important":[17],"issues":[18],"us":[20],"how":[22,32],"to":[23,26,33,78],"motivate":[24],"use":[27],"new":[28],"computational":[29,39,42,69,83],"technologies":[30],"best":[34],"incorporate":[35],"integrate":[37],"disparate":[38],"resources":[40],"into":[41],"biology":[43,132],"research.":[44],"In":[45],"recent":[46],"efforts,":[47],"have":[49],"focused":[50],"on":[51],"the":[52,86,95,104,110],"development":[53],"of":[54,109,119],"tools":[55,75,120],"that":[56,63,91,98],"support":[57],"specific":[58,74],"abstractions":[60],"or":[61],"models":[62],"may":[64],"be":[65],"used":[66],"as":[67,129],"cognitive":[68],"frameworks":[70],"biologists.":[72],"The":[73],"allow":[76],"view":[79],"organize":[81],"their":[82,122],"work":[84],"along":[85],"concepts":[88],"theories":[90],"under":[93],"investigation,":[94],"experimental":[96],"processes":[97],"being":[100,113],"carried":[101],"out,":[102],"logical":[105],"structures":[106],"properties":[108],"data":[112],"examined":[114],"explored.":[116],"This":[117],"collection":[118],"underlying":[123],"framework":[124],"comprise":[125],"a":[126],"system":[127],"known":[128],"SysBioPSE":[130],"(system":[131],"problem":[133],"solving":[134],"environment)":[135]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
