{"id":"https://openalex.org/W3096927411","doi":"https://doi.org/10.1109/icpr48806.2021.9413045","title":"Robust Skeletonization for Plant Root Structure Reconstruction from MRI","display_name":"Robust Skeletonization for Plant Root Structure Reconstruction from MRI","publication_year":2021,"publication_date":"2021-01-10","ids":{"openalex":"https://openalex.org/W3096927411","doi":"https://doi.org/10.1109/icpr48806.2021.9413045","mag":"3096927411"},"language":"en","primary_location":{"id":"doi:10.1109/icpr48806.2021.9413045","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icpr48806.2021.9413045","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 25th International Conference on Pattern Recognition (ICPR)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2010.14440","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087134448","display_name":"Jannis Horn","orcid":"https://orcid.org/0000-0003-0005-2727"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jannis Horn","raw_affiliation_strings":["Autonomous Intelligence Systems Group, University of Bonn"],"affiliations":[{"raw_affiliation_string":"Autonomous Intelligence Systems Group, University of Bonn","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077280762","display_name":"Yi Zhao","orcid":"https://orcid.org/0000-0001-5368-3595"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Yi Zhao","raw_affiliation_strings":["Autonomous Intelligence Systems Group, University of Bonn"],"affiliations":[{"raw_affiliation_string":"Autonomous Intelligence Systems Group, University of Bonn","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011671299","display_name":"Nils Wandel","orcid":"https://orcid.org/0000-0002-7787-3622"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nils Wandel","raw_affiliation_strings":["Autonomous Intelligence Systems Group, University of Bonn"],"affiliations":[{"raw_affiliation_string":"Autonomous Intelligence Systems Group, University of Bonn","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012295417","display_name":"Magdalena Landl","orcid":"https://orcid.org/0000-0002-8567-0454"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Magdalena Landl","raw_affiliation_strings":["Porschungszentrum J\u00fclich GmbH, Agrosphere (IBG-3)"],"affiliations":[{"raw_affiliation_string":"Porschungszentrum J\u00fclich GmbH, Agrosphere (IBG-3)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033444778","display_name":"Andrea Schnepf","orcid":"https://orcid.org/0000-0003-2203-4466"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrea Schnepf","raw_affiliation_strings":["Porschungszentrum J\u00fclich GmbH, Agrosphere (IBG-3)"],"affiliations":[{"raw_affiliation_string":"Porschungszentrum J\u00fclich GmbH, Agrosphere (IBG-3)","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027761977","display_name":"Sven Behnke","orcid":"https://orcid.org/0000-0002-5040-7525"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sven Behnke","raw_affiliation_strings":["Autonomous Intelligence Systems Group, University of Bonn"],"affiliations":[{"raw_affiliation_string":"Autonomous Intelligence Systems Group, University of Bonn","institution_ids":["https://openalex.org/I135140700"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5087134448"],"corresponding_institution_ids":["https://openalex.org/I135140700"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00369847,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"10689","last_page":"10696"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9753999710083008,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11312","display_name":"Soil Moisture and Remote Sensing","score":0.9660000205039978,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/skeletonization","display_name":"Skeletonization","score":0.9349386692047119},{"id":"https://openalex.org/keywords/root","display_name":"Root (linguistics)","score":0.6338851451873779},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.629360020160675},{"id":"https://openalex.org/keywords/connected-component","display_name":"Connected component","score":0.5774988532066345},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5684490203857422},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5642633438110352},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5337366461753845},{"id":"https://openalex.org/keywords/stage","display_name":"Stage (stratigraphy)","score":0.48642396926879883},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4749348759651184},{"id":"https://openalex.org/keywords/cut","display_name":"Cut","score":0.4244224727153778},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.42277437448501587},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.39208200573921204},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3300541639328003},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.3037225306034088},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12085762619972229},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.07459470629692078}],"concepts":[{"id":"https://openalex.org/C23951316","wikidata":"https://www.wikidata.org/wiki/Q1984140","display_name":"Skeletonization","level":2,"score":0.9349386692047119},{"id":"https://openalex.org/C171078966","wikidata":"https://www.wikidata.org/wiki/Q111029","display_name":"Root (linguistics)","level":2,"score":0.6338851451873779},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.629360020160675},{"id":"https://openalex.org/C193435613","wikidata":"https://www.wikidata.org/wiki/Q2997928","display_name":"Connected component","level":2,"score":0.5774988532066345},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5684490203857422},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5642633438110352},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5337366461753845},{"id":"https://openalex.org/C146357865","wikidata":"https://www.wikidata.org/wiki/Q1123245","display_name":"Stage (stratigraphy)","level":2,"score":0.48642396926879883},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4749348759651184},{"id":"https://openalex.org/C5134670","wikidata":"https://www.wikidata.org/wiki/Q1626444","display_name":"Cut","level":4,"score":0.4244224727153778},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.42277437448501587},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.39208200573921204},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3300541639328003},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.3037225306034088},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12085762619972229},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.07459470629692078},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/icpr48806.2021.9413045","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icpr48806.2021.9413045","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 25th International Conference on Pattern Recognition (ICPR)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:2010.14440","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2010.14440","pdf_url":"https://arxiv.org/pdf/2010.14440","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:3096927411","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/2010.14440","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2010.14440","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2010.14440","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2010.14440","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2010.14440","pdf_url":"https://arxiv.org/pdf/2010.14440","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G2509284069","display_name":null,"funder_award_id":"1361/3-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4825102245","display_name":null,"funder_award_id":"361/3-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G98876835","display_name":null,"funder_award_id":"SCHN 1361/3-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3096927411.pdf","grobid_xml":"https://content.openalex.org/works/W3096927411.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W61997153","https://openalex.org/W134565792","https://openalex.org/W1966199068","https://openalex.org/W1978112927","https://openalex.org/W1981934656","https://openalex.org/W2031674734","https://openalex.org/W2044105167","https://openalex.org/W2073989186","https://openalex.org/W2115919899","https://openalex.org/W2118450180","https://openalex.org/W2138287062","https://openalex.org/W2169528473","https://openalex.org/W2224618002","https://openalex.org/W3013003825","https://openalex.org/W3126722212","https://openalex.org/W6761151161","https://openalex.org/W6774128338"],"related_works":["https://openalex.org/W3158404701","https://openalex.org/W2921655772","https://openalex.org/W3126722212","https://openalex.org/W2390539825","https://openalex.org/W2249323287","https://openalex.org/W2751865213","https://openalex.org/W2051362717","https://openalex.org/W2017973502","https://openalex.org/W1661454636","https://openalex.org/W3202049406","https://openalex.org/W3092645103","https://openalex.org/W2372499098","https://openalex.org/W2914284929","https://openalex.org/W51187581","https://openalex.org/W3041205829","https://openalex.org/W2301124726","https://openalex.org/W2082335822","https://openalex.org/W3011220398","https://openalex.org/W2333102131","https://openalex.org/W2590402062"],"abstract_inverted_index":{"Structural":[0],"reconstruction":[1],"of":[2,10,17],"plant":[3],"roots":[4],"from":[5,53],"MRI":[6,89],"is":[7,41],"challenging,":[8],"because":[9],"low":[11,14],"resolution":[12],"and":[13,26,49,74,91],"signal-to-noise":[15],"ratio":[16],"the":[18,58,64,71],"3D":[19,76],"measurements":[20],"which":[21],"may":[22],"lead":[23],"to":[24,57,78,93],"disconnectivities":[25],"wrongly":[27],"connected":[28,67],"roots.":[29],"We":[30,83],"propose":[31],"a":[32,80],"two-stage":[33],"approach":[34],"for":[35],"this":[36],"task.":[37],"The":[38,60],"first":[39,72],"stage":[40,62,73],"based":[42],"on":[43,87],"semantic":[44],"root":[45,55],"vs.":[46],"soil":[47],"segmentation":[48],"finds":[50],"lowest-cost":[51],"paths":[52],"any":[54],"voxel":[56],"shoot.":[59],"second":[61],"takes":[63],"largest":[65],"fully":[66],"component":[68],"generated":[69],"in":[70],"uses":[75],"skeletonization":[77],"extract":[79],"graph":[81],"structure.":[82],"evaluate":[84],"our":[85],"method":[86],"22":[88],"scans":[90],"compare":[92],"human":[94],"expert":[95],"reconstructions.":[96]},"counts_by_year":[],"updated_date":"2026-04-20T07:46:08.049788","created_date":"2025-10-10T00:00:00"}
