{"id":"https://openalex.org/W2096523521","doi":"https://doi.org/10.1109/icpr.2002.1048211","title":"Fast semi-local alignment for DNA sequence database search","display_name":"Fast semi-local alignment for DNA sequence database search","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W2096523521","doi":"https://doi.org/10.1109/icpr.2002.1048211","mag":"2096523521"},"language":"en","primary_location":{"id":"doi:10.1109/icpr.2002.1048211","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icpr.2002.1048211","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Object recognition supported by user interaction for service robots","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100739157","display_name":"Yong\u2010Sheng Chen","orcid":"https://orcid.org/0000-0002-5581-850X"},"institutions":[{"id":"https://openalex.org/I2803004286","display_name":"Taipei Veterans General Hospital","ror":"https://ror.org/03ymy8z76","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I2803004286"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Yong-Sheng Chen","raw_affiliation_strings":["Integrated Brain Research Laboratory, Department of Medical Research & Education, Taipei Veterans General Hospital, Taipei, Taiwan","Dept. of Med. Res. & Educ., Taipei Veterans Gen. Hosp., Taiwan"],"affiliations":[{"raw_affiliation_string":"Integrated Brain Research Laboratory, Department of Medical Research & Education, Taipei Veterans General Hospital, Taipei, Taiwan","institution_ids":["https://openalex.org/I2803004286"]},{"raw_affiliation_string":"Dept. of Med. Res. & Educ., Taipei Veterans Gen. Hosp., Taiwan","institution_ids":["https://openalex.org/I2803004286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102935450","display_name":"Yi\u2010Ping Hung","orcid":"https://orcid.org/0009-0007-3792-9509"},"institutions":[{"id":"https://openalex.org/I154864474","display_name":"National Taiwan University of Science and Technology","ror":"https://ror.org/00q09pe49","country_code":"TW","type":"education","lineage":["https://openalex.org/I154864474"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-Ping Hung","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University of Science and Technology, Taiwan","Institute of Information Science, Academia Sinica, Taipei, Taiwan","National Taiwan University","Academia Sinica - Institute of Information Science"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University of Science and Technology, Taiwan","institution_ids":["https://openalex.org/I154864474"]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]},{"raw_affiliation_string":"National Taiwan University","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Academia Sinica - Institute of Information Science","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027130404","display_name":"Chiou\u2010Shann Fuh","orcid":"https://orcid.org/0000-0002-6174-2556"},"institutions":[{"id":"https://openalex.org/I154864474","display_name":"National Taiwan University of Science and Technology","ror":"https://ror.org/00q09pe49","country_code":"TW","type":"education","lineage":["https://openalex.org/I154864474"]},{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chiou-Shann Fuh","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University of Science and Technology, Taiwan","National Taiwan University > > > >  >  >"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University of Science and Technology, Taiwan","institution_ids":["https://openalex.org/I154864474"]},{"raw_affiliation_string":"National Taiwan University > > > >  >  >","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100739157"],"corresponding_institution_ids":["https://openalex.org/I2803004286"],"apc_list":null,"apc_paid":null,"fwci":0.4569,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.74192022,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"3","issue":null,"first_page":"1019","last_page":"1022"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7203205823898315},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6431629657745361},{"id":"https://openalex.org/keywords/edit-distance","display_name":"Edit distance","score":0.5557573437690735},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.527718722820282},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5110527276992798},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.46493786573410034},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.46168628334999084},{"id":"https://openalex.org/keywords/signal","display_name":"SIGNAL (programming language)","score":0.41336870193481445},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.41090285778045654},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3470541834831238},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21387523412704468}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7203205823898315},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6431629657745361},{"id":"https://openalex.org/C44359876","wikidata":"https://www.wikidata.org/wiki/Q5338467","display_name":"Edit distance","level":2,"score":0.5557573437690735},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.527718722820282},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5110527276992798},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.46493786573410034},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.46168628334999084},{"id":"https://openalex.org/C2779843651","wikidata":"https://www.wikidata.org/wiki/Q7390335","display_name":"SIGNAL (programming language)","level":2,"score":0.41336870193481445},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.41090285778045654},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3470541834831238},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21387523412704468},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icpr.2002.1048211","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icpr.2002.1048211","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Object recognition supported by user interaction for service robots","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1970026646","https://openalex.org/W2020065011","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2143679819","https://openalex.org/W2610179052","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W3044917232","https://openalex.org/W1498160656","https://openalex.org/W2055693471","https://openalex.org/W2119149496","https://openalex.org/W2139858675","https://openalex.org/W2007540612","https://openalex.org/W2054882906","https://openalex.org/W2136066520","https://openalex.org/W1683131097","https://openalex.org/W2354598492"],"abstract_inverted_index":{"Given":[0],"a":[1,27,34,38],"query":[2,111],"DNA":[3,12,35,49],"sequence,":[4],"our":[5],"goal":[6],"is":[7],"to":[8,22,73,91,109],"find":[9],"in":[10],"the":[11,16,23,44,55,76,81,96,102,110],"sequence":[13,17,36,83,103],"database":[14],"all":[15,101],"segments":[18,84,104],"that":[19,31,85,105],"are":[20,106],"similar":[21,107],"query.":[24],"We":[25],"present":[26],"string-to-signal":[28],"transform":[29,33],"technique":[30],"can":[32,51,69,112],"into":[37],"four-channel":[39,64],"signal.":[40],"Without":[41],"considering":[42],"gaps,":[43],"edit":[45],"distance":[46],"between":[47,61],"two":[48],"sequences":[50],"be":[52,71,113],"calculated":[53],"as":[54],"sum":[56],"of":[57,78],"absolute":[58],"difference":[59],"(SAD)":[60],"their":[62],"corresponding":[63],"signals.":[65],"The":[66],"algorithm":[67,94],"proposed":[68],"then":[70],"applied":[72],"speed":[74],"up":[75],"process":[77],"searching":[79],"for":[80],"desired":[82],"yield":[86],"small":[87],"SADs.":[88],"In":[89],"addition":[90],"efficiency,":[92],"this":[93],"guarantees":[95],"optimal":[97],"search.":[98],"That":[99],"is,":[100],"enough":[108],"found":[114],"without":[115],"any":[116],"miss.":[117]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}