{"id":"https://openalex.org/W2159782981","doi":"https://doi.org/10.1109/icpp.2002.1040889","title":"Space and time efficient parallel algorithms and software for EST clustering","display_name":"Space and time efficient parallel algorithms and software for EST clustering","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W2159782981","doi":"https://doi.org/10.1109/icpp.2002.1040889","mag":"2159782981"},"language":"en","primary_location":{"id":"doi:10.1109/icpp.2002.1040889","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icpp.2002.1040889","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings International Conference on Parallel Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014307317","display_name":"Anantharaman Kalyanaraman","orcid":null},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. Kalyanaraman","raw_affiliation_strings":["Department of CS, Iowa State University, Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Department of CS, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074347913","display_name":"Srinivas Aluru","orcid":"https://orcid.org/0000-0003-4279-469X"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Aluru","raw_affiliation_strings":["Department of ECpE, Iowa State University, Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Department of ECpE, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111460178","display_name":"S.C. Kothari","orcid":"https://orcid.org/0009-0005-6792-3015"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Kothari","raw_affiliation_strings":["Department of ECpE, Iowa State University, Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Department of ECpE, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5014307317"],"corresponding_institution_ids":["https://openalex.org/I173911158"],"apc_list":null,"apc_paid":null,"fwci":0.9137,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.82031012,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"93","issue":null,"first_page":"331","last_page":"339"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8634076118469238},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7614730596542358},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5708739161491394},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5583686232566833},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44166314601898193},{"id":"https://openalex.org/keywords/correlation-clustering","display_name":"Correlation clustering","score":0.4119794964790344},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4102139472961426},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35406196117401123},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.314123272895813},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13997992873191833}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8634076118469238},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7614730596542358},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5708739161491394},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5583686232566833},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44166314601898193},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.4119794964790344},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4102139472961426},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35406196117401123},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.314123272895813},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13997992873191833}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icpp.2002.1040889","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icpp.2002.1040889","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings International Conference on Parallel Processing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W603639406","https://openalex.org/W938539187","https://openalex.org/W1557880001","https://openalex.org/W1589993665","https://openalex.org/W1592075737","https://openalex.org/W1839674003","https://openalex.org/W1971784203","https://openalex.org/W1986022261","https://openalex.org/W1990061958","https://openalex.org/W2003200876","https://openalex.org/W2015292449","https://openalex.org/W2055043387","https://openalex.org/W2055666215","https://openalex.org/W2059513841","https://openalex.org/W2074231493","https://openalex.org/W2074582967","https://openalex.org/W2077689651","https://openalex.org/W2087064593","https://openalex.org/W2101972919","https://openalex.org/W2104189907","https://openalex.org/W2110732466","https://openalex.org/W2121252285","https://openalex.org/W2124367310","https://openalex.org/W2136466390","https://openalex.org/W2144975794","https://openalex.org/W2149238618","https://openalex.org/W2150483253","https://openalex.org/W2151308110","https://openalex.org/W2159497035","https://openalex.org/W2166265186","https://openalex.org/W2170906307","https://openalex.org/W2320748401","https://openalex.org/W2533248932","https://openalex.org/W2762948820","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W1999117613","https://openalex.org/W2040929534","https://openalex.org/W3022637481","https://openalex.org/W2393816671","https://openalex.org/W3120229345","https://openalex.org/W2804957450","https://openalex.org/W3144143113","https://openalex.org/W2111119584","https://openalex.org/W3039964395","https://openalex.org/W1887359504"],"abstract_inverted_index":{"Expressed":[0],"sequence":[1],"tags,":[2],"ESTs,":[3],"are":[4],"DNA":[5],"molecules":[6],"experimentally":[7],"derived":[8],"from":[9],"expressed":[10],"portions":[11],"of":[12,15,42,63,71,77,90,98,110,116,127,133,140,162],"genes.":[13],"Clustering":[14],"ESTs":[16,143],"is":[17,54,156],"essential":[18],"for":[19,47],"gene":[20],"recognition":[21],"and":[22,40,113,123],"understanding":[23],"important":[24],"genetic":[25],"variations":[26],"such":[27,57],"as":[28],"those":[29],"resulting":[30],"in":[31,66,87,144],"diseases.":[32],"In":[33],"this":[34,53],"paper,":[35],"we":[36,136],"present":[37],"the":[38,55,61,83,88,91,103,108,121,125,138,169,174],"design":[39,76],"development":[41],"a":[43,96,131,149,153,165],"parallel":[44,117],"software":[45,175],"system":[46],"EST":[48,64,111],"clustering.":[49],"To":[50],"our":[51,72],"knowledge,":[52],"first":[56],"effort":[58],"to":[59,81,101,119,158,172],"address":[60],"problem":[62,154],"clustering":[65,126,139],"parallel.":[67],"The":[68],"novel":[69],"features":[70],"approach":[73],"include":[74],"1)":[75],"space":[78,84],"efficient":[79],"algorithms":[80],"keep":[82],"requirement":[85],"linear":[86],"size":[89],"input":[92],"data":[93],"set,":[94],"2)":[95],"combination":[97,132],"algorithmic":[99],"techniques":[100],"reduce":[102,120],"total":[104],"work":[105],"without":[106],"sacrificing":[107],"quality":[109],"clustering,":[112],"3)":[114],"use":[115],"processing":[118],"run-time":[122,163],"facilitate":[124],"large":[128],"datasets.":[129],"Using":[130],"these":[134],"techniques,":[135],"report":[137],"81,414":[141],"Arabidopsis":[142],"under":[145],"2.5":[146],"minutes":[147],"on":[148],"64-processor":[150],"IBM":[151],"SP,":[152],"that":[155],"estimated":[157],"take":[159],"9":[160],"hours":[161],"with":[164],"state-of-the-art":[166],"software,":[167],"provided":[168],"memory":[170],"required":[171],"run":[173],"can":[176],"be":[177],"made":[178],"available.":[179]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
