{"id":"https://openalex.org/W2131673172","doi":"https://doi.org/10.1109/icnc.2011.6022506","title":"Algebraic length distribution of sequence duplications in whole genomes","display_name":"Algebraic length distribution of sequence duplications in whole genomes","publication_year":2011,"publication_date":"2011-07-01","ids":{"openalex":"https://openalex.org/W2131673172","doi":"https://doi.org/10.1109/icnc.2011.6022506","mag":"2131673172"},"language":"en","primary_location":{"id":"doi:10.1109/icnc.2011.6022506","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icnc.2011.6022506","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 Seventh International Conference on Natural Computation","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072445451","display_name":"Eddy Taillefer","orcid":null},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Eddy Taillefer","raw_affiliation_strings":["Physics and Biology Unit, Okinawa Institute of Science and Technology, Okinawa, Onna-son, Kunigami-gun, Japan","Physics and Biology Unit, Okinawa Institute of Science and Technology, 1919-1 Tancha, Onna-son, Kunigami-gun, Japan 904-0412"],"affiliations":[{"raw_affiliation_string":"Physics and Biology Unit, Okinawa Institute of Science and Technology, Okinawa, Onna-son, Kunigami-gun, Japan","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"Physics and Biology Unit, Okinawa Institute of Science and Technology, 1919-1 Tancha, Onna-son, Kunigami-gun, Japan 904-0412","institution_ids":["https://openalex.org/I142637625"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006966534","display_name":"Jonathan Miller","orcid":"https://orcid.org/0000-0003-2190-6824"},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jonathan Miller","raw_affiliation_strings":["Physics and Biology Unit, Okinawa Institute of Science and Technology, Okinawa, Onna-son, Kunigami-gun, Japan","Physics and Biology Unit, Okinawa Institute of Science and Technology, 1919-1 Tancha, Onna-son, Kunigami-gun, Japan 904-0412"],"affiliations":[{"raw_affiliation_string":"Physics and Biology Unit, Okinawa Institute of Science and Technology, Okinawa, Onna-son, Kunigami-gun, Japan","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"Physics and Biology Unit, Okinawa Institute of Science and Technology, 1919-1 Tancha, Onna-son, Kunigami-gun, Japan 904-0412","institution_ids":["https://openalex.org/I142637625"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5072445451"],"corresponding_institution_ids":["https://openalex.org/I142637625"],"apc_list":null,"apc_paid":null,"fwci":0.2606,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.58680484,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"51","issue":null,"first_page":"1454","last_page":"1460"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5732501149177551},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5590323805809021},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.46954450011253357},{"id":"https://openalex.org/keywords/distribution","display_name":"Distribution (mathematics)","score":0.445800244808197},{"id":"https://openalex.org/keywords/power-law","display_name":"Power law","score":0.41478726267814636},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.371158242225647},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.3557366728782654},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.283954918384552},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27058130502700806},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.11799553036689758},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.10511079430580139},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09632948040962219}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5732501149177551},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5590323805809021},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.46954450011253357},{"id":"https://openalex.org/C110121322","wikidata":"https://www.wikidata.org/wiki/Q865811","display_name":"Distribution (mathematics)","level":2,"score":0.445800244808197},{"id":"https://openalex.org/C87040749","wikidata":"https://www.wikidata.org/wiki/Q428971","display_name":"Power law","level":2,"score":0.41478726267814636},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.371158242225647},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.3557366728782654},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.283954918384552},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27058130502700806},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.11799553036689758},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.10511079430580139},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09632948040962219},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icnc.2011.6022506","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icnc.2011.6022506","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 Seventh International Conference on Natural Computation","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.699999988079071,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1565688698","https://openalex.org/W1971398555","https://openalex.org/W2045040686","https://openalex.org/W2059920749","https://openalex.org/W2062478949","https://openalex.org/W2070001009","https://openalex.org/W2078206416","https://openalex.org/W2100990361","https://openalex.org/W2127569533","https://openalex.org/W2134283755","https://openalex.org/W2135123683","https://openalex.org/W2151464048","https://openalex.org/W2800860906","https://openalex.org/W2950627632","https://openalex.org/W3103362336","https://openalex.org/W4210992751","https://openalex.org/W4229487902","https://openalex.org/W4248144314","https://openalex.org/W6785073665"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W193851735","https://openalex.org/W2773861473","https://openalex.org/W1971903861","https://openalex.org/W3047903919","https://openalex.org/W40194678"],"abstract_inverted_index":{"The":[0,223,239,282],"field":[1],"of":[2,8,17,26,36,54,64,78,85,88,99,171,203,213,227,242,246,262,264,279,284,288,299,303,321],"comparative":[3],"genomics":[4],"relies":[5],"upon":[6],"inference":[7],"neutrality":[9],"or":[10,70,75],"selection":[11],"from":[12,236],"sequence":[13,28,77,265,290,323],"conservation.":[14],"Recent":[15],"studies":[16],"exactly-conserved":[18],"sequences":[19],"have":[20],"revealed":[21],"an":[22,107,267,285],"anomalous,":[23],"algebraic":[24,108,225,240,268,286],"distribution":[25,125,133,229,245,287,320],"conserved":[27],"lengths":[29,195,248,291],"that":[30,48,96,119,145,155,185,210,252,314],"is":[31,134,148,180,230,295,309],"inconsistent":[32],"with":[33,190,266,311],"standard":[34],"models":[35],"neutral":[37],"evolution":[38],"based":[39,114],"solely":[40],"on":[41,115,276,305],"local":[42],"mutation.":[43],"It":[44,271],"has":[45],"been":[46],"proposed":[47],"linkage":[49,304,315],"contributes":[50,316],"to":[51,122,137,150,188,201,207,317],"the":[52,97,102,128,132,146,151,157,177,211,214,231,243,300,312,318],"shape":[53],"this":[55,124],"anomalous":[56,319],"distribution.":[57,270],"Here":[58],"we":[59,94],"identify,":[60],"for":[61,182],"a":[62,73,79,83,89,112,116,140,167,191,208,257,293,296],"variety":[63],"species,":[65,162],"all":[66],"`maximal'":[67],"repeats,":[68],"direct":[69,297],"reverse-complement,":[71],"within":[72,166,292],"chromosomal":[74],"whole-genome":[76],"single":[80],"genome.":[81],"For":[82],"set":[84,103],"maximal":[86],"repeats":[87],"given":[90],"nucleotide":[91],"length":[92,269],"L,":[93],"report":[95],"number":[98],"elements":[100],"in":[101,176,193],"F(L)":[104],"typically":[105],"exhibits":[106],"tail.":[109],"We":[110,143],"propose":[111],"method":[113],"cost":[117],"function":[118],"allows":[120],"us":[121],"analyze":[123],"and":[126,154,196,308],"estimate":[127],"range":[129,147,170],"over":[130],"what":[131],"most":[135,232],"likely":[136],"be":[138,199],"well-approximated":[139],"power":[141],"law.":[142],"find":[144],"proportional":[149],"genome":[152,204,280,294,306],"size":[153],"although":[156],"power-law":[158,178,215],"exponent":[159],"differs":[160],"between":[161],"it":[163],"falls":[164],"chiefly":[165],"relatively":[168],"narrow":[169],"values.":[172],"A":[173],"sharp":[174],"cut-off":[175],"regime":[179,216],"observed":[181],"some":[183],"genomes":[184],"turns":[186],"out":[187],"coincide":[189],"peak":[192],"contig":[194],"therefore":[197],"can":[198],"attributed":[200],"artifacts":[202],"assembly,":[205],"leading":[206],"prediction":[209],"extent":[212],"will":[217],"increase":[218],"as":[219,256],"assemblies":[220],"are":[221],"improved.":[222],"typical":[224],"behavior":[226],"length-frequency":[228],"remarkable":[233],"observation":[234,283],"emerging":[235],"our":[237],"analysis.":[238],"form":[241],"empirical":[244],"duplication":[247],"characterized":[249],"here":[250],"suggests":[251],"recombination":[253],"events":[254],"might":[255],"general":[258],"rule":[259],"involve":[260],"transfer":[261],"chunks":[263],"also":[272],"places":[273],"strong":[274],"constraints":[275],"any":[277],"model":[278],"evolution.":[281],"exactly-duplicated":[289],"demonstration":[298],"net":[301],"impact":[302],"evolution,":[307],"consistent":[310],"proposal":[313],"strongly-conserved":[322],"lengths.":[324]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
