{"id":"https://openalex.org/W4402980003","doi":"https://doi.org/10.1109/icme57554.2024.10687400","title":"Progressive Multi-Modality Learning for Inverse Protein Folding","display_name":"Progressive Multi-Modality Learning for Inverse Protein Folding","publication_year":2024,"publication_date":"2024-07-15","ids":{"openalex":"https://openalex.org/W4402980003","doi":"https://doi.org/10.1109/icme57554.2024.10687400"},"language":"en","primary_location":{"id":"doi:10.1109/icme57554.2024.10687400","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icme57554.2024.10687400","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Multimedia and Expo (ICME)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101808238","display_name":"Jiangbin Zheng","orcid":"https://orcid.org/0000-0003-3305-0103"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiangbin Zheng","raw_affiliation_strings":["Zhejiang University,Hangzhou,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang University,Hangzhou,China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082786719","display_name":"Stan Z. Li","orcid":"https://orcid.org/0000-0002-2961-8096"},"institutions":[{"id":"https://openalex.org/I3133055985","display_name":"Westlake University","ror":"https://ror.org/05hfa4n20","country_code":"CN","type":"education","lineage":["https://openalex.org/I3133055985"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Stan Z. Li","raw_affiliation_strings":["Westlake University,AI Lab,Hangzhou,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Westlake University,AI Lab,Hangzhou,China","institution_ids":["https://openalex.org/I3133055985"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9319999814033508,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9319999814033508,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9266999959945679,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9099000096321106,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.7230921983718872},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6148902773857117},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.4854481816291809},{"id":"https://openalex.org/keywords/inverse","display_name":"Inverse","score":0.4656456410884857},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4105623960494995},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1401977837085724},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12484616041183472},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.0913129448890686},{"id":"https://openalex.org/keywords/structural-engineering","display_name":"Structural engineering","score":0.0877101719379425}],"concepts":[{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.7230921983718872},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6148902773857117},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.4854481816291809},{"id":"https://openalex.org/C207467116","wikidata":"https://www.wikidata.org/wiki/Q4385666","display_name":"Inverse","level":2,"score":0.4656456410884857},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4105623960494995},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1401977837085724},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12484616041183472},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0913129448890686},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0877101719379425}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icme57554.2024.10687400","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icme57554.2024.10687400","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Multimedia and Expo (ICME)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320318567","display_name":"Westlake University","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320329860","display_name":"National Science and Technology Major Project","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1954297438","https://openalex.org/W2108067237","https://openalex.org/W2790952361","https://openalex.org/W3088578860","https://openalex.org/W3147467731","https://openalex.org/W3194968841","https://openalex.org/W3203359574","https://openalex.org/W4210861939","https://openalex.org/W4285209827","https://openalex.org/W4296032638","https://openalex.org/W4312910375","https://openalex.org/W4323075934","https://openalex.org/W4385245566","https://openalex.org/W4386065518","https://openalex.org/W4390872682","https://openalex.org/W4391528813","https://openalex.org/W4393160377","https://openalex.org/W4402783890","https://openalex.org/W6765474767","https://openalex.org/W6810245500"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2385859805","https://openalex.org/W2530972254","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"While":[0],"deep":[1],"generative":[2],"models":[3],"show":[4],"promise":[5],"for":[6],"learning":[7],"inverse":[8],"protein":[9,46,85,128],"folding":[10],"directly":[11],"from":[12],"data,":[13],"the":[14,61,93,109,125],"lack":[15],"of":[16,127],"publicly":[17],"available":[18],"structure-sequence":[19],"pairings":[20],"limits":[21],"their":[22],"generalization.":[23],"Previous":[24],"improvements":[25],"and":[26,121],"data":[27],"augmentation":[28],"efforts":[29],"to":[30,82],"overcome":[31],"this":[32,40],"bottleneck":[33],"have":[34],"been":[35],"insufficient.":[36],"To":[37,56,106],"further":[38,107],"address":[39],"challenge,":[41],"we":[42,112],"propose":[43],"a":[44,66,71],"novel":[45],"design":[47],"paradigm":[48],"called":[49],"MMDesign,":[50],"which":[51],"leverages":[52],"multi-modality":[53],"transfer":[54],"learning.":[55],"our":[57],"knowledge,":[58],"MMDesign":[59,98],"is":[60],"first":[62],"framework":[63],"that":[64,97,118],"combines":[65],"pretrained":[67,72],"structural":[68],"module":[69],"with":[70,92],"contextual":[73],"module,":[74],"using":[75],"an":[76],"auto-encoder":[77],"(AE)":[78],"based":[79],"language":[80],"model":[81],"incorporate":[83],"prior":[84],"semantic":[86],"knowledge.":[87],"Experimental":[88],"results,":[89],"only":[90],"training":[91],"small":[94],"dataset,":[95],"demonstrate":[96],"consistently":[99],"outperforms":[100],"baselines":[101],"on":[102],"various":[103],"public":[104],"benchmarks.":[105],"assess":[108],"biological":[110],"plausibility,":[111],"present":[113],"systematic":[114],"quantitative":[115],"analysis":[116],"techniques":[117],"provide":[119],"interpretability":[120],"reveal":[122],"more":[123],"about":[124],"laws":[126],"design.":[129]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
