{"id":"https://openalex.org/W2057538009","doi":"https://doi.org/10.1109/icitst.2013.6750194","title":"A workflow for parallel and distributed computing of large-scale genomic data","display_name":"A workflow for parallel and distributed computing of large-scale genomic data","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W2057538009","doi":"https://doi.org/10.1109/icitst.2013.6750194","mag":"2057538009"},"language":"en","primary_location":{"id":"doi:10.1109/icitst.2013.6750194","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icitst.2013.6750194","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"8th International Conference for Internet Technology and Secured Transactions (ICITST-2013)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006178757","display_name":"Hyun-Hwa Choi","orcid":"https://orcid.org/0009-0007-3895-5186"},"institutions":[{"id":"https://openalex.org/I142401562","display_name":"Electronics and Telecommunications Research Institute","ror":"https://ror.org/03ysstz10","country_code":"KR","type":"facility","lineage":["https://openalex.org/I142401562","https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Hyun-Hwa Choi","raw_affiliation_strings":["Department of Cloud Computing Research, Electronics and Telecommunications Research Institute, Daejeon, Rep. of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Cloud Computing Research, Electronics and Telecommunications Research Institute, Daejeon, Rep. of Korea","institution_ids":["https://openalex.org/I142401562"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053722666","display_name":"Byoung-Seob Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I142401562","display_name":"Electronics and Telecommunications Research Institute","ror":"https://ror.org/03ysstz10","country_code":"KR","type":"facility","lineage":["https://openalex.org/I142401562","https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Byoung-Seob Kim","raw_affiliation_strings":["Department of Cloud Computing Research, Electronics and Telecommunications Research Institute, Daejeon, Rep. of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Cloud Computing Research, Electronics and Telecommunications Research Institute, Daejeon, Rep. of Korea","institution_ids":["https://openalex.org/I142401562"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063953385","display_name":"Shinyoung Ahn","orcid":"https://orcid.org/0000-0002-2686-7273"},"institutions":[{"id":"https://openalex.org/I142401562","display_name":"Electronics and Telecommunications Research Institute","ror":"https://ror.org/03ysstz10","country_code":"KR","type":"facility","lineage":["https://openalex.org/I142401562","https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Shin-Young Ahn","raw_affiliation_strings":["Department of Cloud Computing Research, Electronics and Telecommunications Research Institute, Daejeon, Rep. of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Cloud Computing Research, Electronics and Telecommunications Research Institute, Daejeon, Rep. of Korea","institution_ids":["https://openalex.org/I142401562"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100904053","display_name":"Seungjo Bae","orcid":null},"institutions":[{"id":"https://openalex.org/I142401562","display_name":"Electronics and Telecommunications Research Institute","ror":"https://ror.org/03ysstz10","country_code":"KR","type":"facility","lineage":["https://openalex.org/I142401562","https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seung-Jo Bae","raw_affiliation_strings":["Department of Cloud Computing Research, Electronics and Telecommunications Research Institute, Daejeon, Rep. of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Cloud Computing Research, Electronics and Telecommunications Research Institute, Daejeon, Rep. of Korea","institution_ids":["https://openalex.org/I142401562"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5006178757"],"corresponding_institution_ids":["https://openalex.org/I142401562"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14546718,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"26","issue":null,"first_page":"215","last_page":"218"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8360654711723328},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8280805349349976},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7180793881416321},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.6639466881752014},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5238658785820007},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4786623418331146},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4671682119369507},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.45437711477279663},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.41784924268722534},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3574238419532776},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34585121273994446},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.24317491054534912},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1416383683681488},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1182747483253479}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8360654711723328},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8280805349349976},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7180793881416321},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.6639466881752014},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5238658785820007},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4786623418331146},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4671682119369507},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.45437711477279663},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.41784924268722534},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3574238419532776},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34585121273994446},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.24317491054534912},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1416383683681488},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1182747483253479},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icitst.2013.6750194","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icitst.2013.6750194","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"8th International Conference for Internet Technology and Secured Transactions (ICITST-2013)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322030","display_name":"Ministry of Science, ICT and Future Planning","ror":"https://ror.org/032e49973"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W1493395974","https://openalex.org/W1752261080","https://openalex.org/W1983833794","https://openalex.org/W1986524791","https://openalex.org/W1996591641","https://openalex.org/W1998092483","https://openalex.org/W2003326844","https://openalex.org/W2005455730","https://openalex.org/W2018488365","https://openalex.org/W2020497670","https://openalex.org/W2027739297","https://openalex.org/W2034287371","https://openalex.org/W2042610263","https://openalex.org/W2048125534","https://openalex.org/W2056261824","https://openalex.org/W2078020236","https://openalex.org/W2080837654","https://openalex.org/W2095176184","https://openalex.org/W2097562343","https://openalex.org/W2097570567","https://openalex.org/W2102203272","https://openalex.org/W2103962383","https://openalex.org/W2105059208","https://openalex.org/W2105682702","https://openalex.org/W2107519897","https://openalex.org/W2107545088","https://openalex.org/W2107570139","https://openalex.org/W2108995071","https://openalex.org/W2109128520","https://openalex.org/W2110673086","https://openalex.org/W2113149943","https://openalex.org/W2115208335","https://openalex.org/W2116187074","https://openalex.org/W2122912033","https://openalex.org/W2129666400","https://openalex.org/W2130877978","https://openalex.org/W2135535457","https://openalex.org/W2136482257","https://openalex.org/W2140830130","https://openalex.org/W2141914143","https://openalex.org/W2143341691","https://openalex.org/W2145352160","https://openalex.org/W2146417595","https://openalex.org/W2148217098","https://openalex.org/W2151472319","https://openalex.org/W2152527373","https://openalex.org/W2152541824","https://openalex.org/W2154438013","https://openalex.org/W2154855769","https://openalex.org/W2157302781","https://openalex.org/W2159939340","https://openalex.org/W2162724207","https://openalex.org/W2166488224","https://openalex.org/W2167543695","https://openalex.org/W2169708187","https://openalex.org/W2171038733","https://openalex.org/W2171372823","https://openalex.org/W2537858688","https://openalex.org/W2564174277","https://openalex.org/W2581172115","https://openalex.org/W2913513779","https://openalex.org/W6758897570"],"related_works":["https://openalex.org/W2391168633","https://openalex.org/W2385499106","https://openalex.org/W2035995658","https://openalex.org/W2376671203","https://openalex.org/W2375304607","https://openalex.org/W2049143847","https://openalex.org/W1574425962","https://openalex.org/W2354357087","https://openalex.org/W2353477037","https://openalex.org/W2387628393"],"abstract_inverted_index":{"Workflow":[0],"management":[1],"systems":[2],"are":[3],"emerging":[4],"as":[5],"dominant":[6],"solution":[7],"in":[8,38],"bioinformatics":[9],"because":[10],"they":[11],"enable":[12],"researchers":[13],"to":[14,42,73,80],"analyze":[15,43,81],"the":[16,59,75,88,93],"huge":[17],"amount":[18],"of":[19,28,61,92],"data":[20,30,44,64],"generated":[21,31],"by":[22,32],"modern":[23],"laboratory":[24],"equipment.":[25],"The":[26],"growth":[27],"genomic":[29],"next":[33],"generation":[34],"sequencing":[35],"(NGS)":[36],"results":[37],"an":[39],"increasing":[40],"need":[41],"on":[45,97],"distributed":[46],"computer":[47],"clusters.":[48],"In":[49],"this":[50],"paper,":[51],"we":[52],"construct":[53],"a":[54,67],"semi-automated":[55],"workflow":[56],"system":[57],"for":[58],"analysis":[60],"large-scale":[62],"sequence":[63,84],"sets,":[65],"describe":[66],"pipeline":[68,94],"designed":[69],"with":[70],"parallel":[71],"computation":[72],"perform":[74],"optimal":[76],"computational":[77],"steps":[78],"required":[79],"whole":[82],"genome":[83],"data,":[85],"and":[86],"report":[87],"overall":[89],"execution":[90],"time":[91],"using":[95],"cores":[96],"multiple":[98],"machines.":[99]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
