{"id":"https://openalex.org/W1965371364","doi":"https://doi.org/10.1109/icis.2013.6607895","title":"Chemical space visualization using ViFrame","display_name":"Chemical space visualization using ViFrame","publication_year":2013,"publication_date":"2013-06-01","ids":{"openalex":"https://openalex.org/W1965371364","doi":"https://doi.org/10.1109/icis.2013.6607895","mag":"1965371364"},"language":"en","primary_location":{"id":"doi:10.1109/icis.2013.6607895","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icis.2013.6607895","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE/ACIS 12th International Conference on Computer and Information Science (ICIS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051837585","display_name":"Petr \u0160koda","orcid":"https://orcid.org/0000-0002-2732-9370"},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Petr Skoda","raw_affiliation_strings":["Faculty of Mathematics and Physics, Charles University, Prague, Czech Republic","Fac. of Math. & Phys., Charles Univ. in Prague, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Physics, Charles University, Prague, Czech Republic","institution_ids":["https://openalex.org/I21250087"]},{"raw_affiliation_string":"Fac. of Math. & Phys., Charles Univ. in Prague, Prague, Czech Republic","institution_ids":["https://openalex.org/I21250087"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049617942","display_name":"David Hoksza","orcid":"https://orcid.org/0000-0003-4679-0557"},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"David Hoksza","raw_affiliation_strings":["Faculty of Mathematics and Physics, Charles University, Prague, Czech Republic","Fac. of Math. & Phys., Charles Univ. in Prague, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Mathematics and Physics, Charles University, Prague, Czech Republic","institution_ids":["https://openalex.org/I21250087"]},{"raw_affiliation_string":"Fac. of Math. & Phys., Charles Univ. in Prague, Prague, Czech Republic","institution_ids":["https://openalex.org/I21250087"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3725,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.62032492,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"47","issue":null,"first_page":"541","last_page":"546"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9362000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8464901447296143},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8009383082389832},{"id":"https://openalex.org/keywords/chemical-space","display_name":"Chemical space","score":0.6855155825614929},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5471363663673401},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5377256274223328},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5140327215194702},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.4903707504272461},{"id":"https://openalex.org/keywords/information-visualization","display_name":"Information visualization","score":0.47820401191711426},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4436757564544678},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4426237940788269},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4273684620857239},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.42205631732940674},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36054885387420654},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31047528982162476},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14343911409378052},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10298857092857361},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.09456536173820496}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8464901447296143},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8009383082389832},{"id":"https://openalex.org/C99726746","wikidata":"https://www.wikidata.org/wiki/Q906396","display_name":"Chemical space","level":3,"score":0.6855155825614929},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5471363663673401},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5377256274223328},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5140327215194702},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.4903707504272461},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.47820401191711426},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4436757564544678},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4426237940788269},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4273684620857239},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.42205631732940674},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36054885387420654},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31047528982162476},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14343911409378052},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10298857092857361},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.09456536173820496},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icis.2013.6607895","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icis.2013.6607895","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE/ACIS 12th International Conference on Computer and Information Science (ICIS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1726174625","https://openalex.org/W1980581986","https://openalex.org/W1988037271","https://openalex.org/W1999745944","https://openalex.org/W2034475831","https://openalex.org/W2046079134","https://openalex.org/W2061843861","https://openalex.org/W2062173542","https://openalex.org/W2083380679","https://openalex.org/W2107636931","https://openalex.org/W2114704115","https://openalex.org/W2122513050","https://openalex.org/W2127553917","https://openalex.org/W2153693853","https://openalex.org/W2172219851","https://openalex.org/W2200017991","https://openalex.org/W2206840988","https://openalex.org/W2294798173","https://openalex.org/W4242320552","https://openalex.org/W4246354968","https://openalex.org/W6637607392"],"related_works":["https://openalex.org/W3010975807","https://openalex.org/W2027333138","https://openalex.org/W3185027765","https://openalex.org/W2096373083","https://openalex.org/W2105200106","https://openalex.org/W2151530263","https://openalex.org/W1574055964","https://openalex.org/W2104025928","https://openalex.org/W2295030662","https://openalex.org/W3009051979"],"abstract_inverted_index":{"Exploration":[0],"of":[1,9,30,73,80,93,108,120,125,146,151,166,169,178,194,205,227,234,240,242],"the":[2,18,21,31,49,70,74,81,109,139,147,170,179,187,192,195,200,206,217,228,235,238],"chemical":[3,32,50,98,110],"space":[4,75,99,111],"is":[5,65,114,128],"an":[6,90,184,213],"important":[7],"component":[8],"drug":[10],"discovery":[11],"process":[12],"and":[13,43,84,156,225],"its":[14],"importance":[15],"grows":[16],"with":[17,52,106,219],"increase":[19],"in":[20,48,69,173,182],"computation":[22],"power":[23],"which":[24],"allows":[25],"to":[26,40,97,129,141],"explore":[27],"larger":[28],"areas":[29],"space.":[33,175],"Recently,":[34],"there":[35,102,113],"emerged":[36],"new":[37,121],"algorithms":[38],"proposed":[39],"automatically":[41],"generate":[42],"search":[44],"for":[45,222],"compounds":[46],"(objects":[47],"space)":[51],"desired":[53],"properties.":[54],"Although":[55],"these":[56],"approaches":[57],"can":[58,76,189],"be":[59],"a":[60,132],"big":[61],"help,":[62],"human":[63],"interaction":[64],"usually":[66,89],"still":[67],"inevitable":[68],"end.":[71],"Visualization":[72],"help":[77],"make":[78],"sense":[79],"generated":[82],"data":[83,161,171],"therefore":[85],"visualization":[86,107,148,168,229,247],"techniques":[87],"are":[88],"integral":[91],"part":[92,145],"any":[94],"task":[95],"related":[96],"exploration.":[100],"Currently,":[101],"exist":[103],"methods":[104,248],"dealing":[105],"but":[112],"no":[115],"framework":[116,134,180,201,210],"supporting":[117],"simple":[118,232],"development":[119,193],"methods.":[122],"The":[123,176,209],"purpose":[124],"this":[126],"paper":[127],"introduce":[130],"such":[131,153],"modular":[133],"called":[135],"ViFrame.":[136],"ViFrame":[137],"offers":[138],"possibility":[140],"implement":[142],"every":[143],"single":[144],"pipeline":[149],"consisting":[150],"steps":[152],"as":[154],"reading":[155],"merging":[157],"molecules":[158],"from":[159],"multiple":[160],"sources,":[162],"applying":[163],"transformations":[164],"and,":[165],"course,":[167],"set":[172],"2D":[174],"advantage":[177],"consists":[181],"providing":[183],"environment":[185],"where":[186],"user":[188,218],"focus":[190],"on":[191],"previously":[196],"mentioned":[197],"tasks":[198],"while":[199],"supports":[202],"seamless":[203],"integration":[204],"developed":[207],"components.":[208],"also":[211],"incorporates":[212],"application":[214,236],"that":[215],"provides":[216],"graphical":[220],"interface":[221],"modules":[223],"manipulation":[224],"presentation":[226],"results.":[230],"For":[231],"utilization":[233],"without":[237],"necessity":[239],"implementation":[241],"one's":[243],"own":[244],"module,":[245],"several":[246],"have":[249],"been":[250],"implemented.":[251]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
