{"id":"https://openalex.org/W2517385157","doi":"https://doi.org/10.1109/icip.2016.7532781","title":"Benchmarking of algorithms for 3D tissue reconstruction","display_name":"Benchmarking of algorithms for 3D tissue reconstruction","publication_year":2016,"publication_date":"2016-08-17","ids":{"openalex":"https://openalex.org/W2517385157","doi":"https://doi.org/10.1109/icip.2016.7532781","mag":"2517385157"},"language":"en","primary_location":{"id":"doi:10.1109/icip.2016.7532781","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icip.2016.7532781","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Image Processing (ICIP)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069504905","display_name":"Kimmo Kartasalo","orcid":"https://orcid.org/0000-0002-9470-4783"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Kimmo Kartasalo","raw_affiliation_strings":["Prostate Cancer Research Center, University of Tampere, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Prostate Cancer Research Center, University of Tampere, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003926457","display_name":"Leena Latonen","orcid":"https://orcid.org/0000-0003-4502-2193"},"institutions":[{"id":"https://openalex.org/I4210126318","display_name":"Tampere University Hospital","ror":"https://ror.org/02hvt5f17","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210126318"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]},{"id":"https://openalex.org/I4210133601","display_name":"Fimlab (Finland)","ror":"https://ror.org/031y6w871","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210133601"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Leena Latonen","raw_affiliation_strings":["Fimlab Laboratories, Tampere University Hospital, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Fimlab Laboratories, Tampere University Hospital, Tampere, Finland","institution_ids":["https://openalex.org/I4210133601","https://openalex.org/I4210133110","https://openalex.org/I4210126318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085775392","display_name":"Tapio Visakorpi","orcid":"https://orcid.org/0000-0002-5004-0364"},"institutions":[{"id":"https://openalex.org/I4210133601","display_name":"Fimlab (Finland)","ror":"https://ror.org/031y6w871","country_code":"FI","type":"company","lineage":["https://openalex.org/I4210133601"]},{"id":"https://openalex.org/I4210126318","display_name":"Tampere University Hospital","ror":"https://ror.org/02hvt5f17","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210126318"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tapio Visakorpi","raw_affiliation_strings":["Fimlab Laboratories, Tampere University Hospital, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Fimlab Laboratories, Tampere University Hospital, Tampere, Finland","institution_ids":["https://openalex.org/I4210133601","https://openalex.org/I4210133110","https://openalex.org/I4210126318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063194021","display_name":"Matti Nykter","orcid":"https://orcid.org/0000-0001-6956-2843"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Matti Nykter","raw_affiliation_strings":["Prostate Cancer Research Center, University of Tampere, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Prostate Cancer Research Center, University of Tampere, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089033830","display_name":"Pekka Ruusuvuori","orcid":"https://orcid.org/0000-0001-9086-9591"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Pekka Ruusuvuori","raw_affiliation_strings":["Prostate Cancer Research Center, University of Tampere, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Prostate Cancer Research Center, University of Tampere, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5069504905"],"corresponding_institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"],"apc_list":null,"apc_paid":null,"fwci":0.167,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.56856361,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"2360","last_page":"2364"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.9195370674133301},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7215073704719543},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.557322084903717},{"id":"https://openalex.org/keywords/3d-reconstruction","display_name":"3D reconstruction","score":0.5352153778076172},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5037891268730164},{"id":"https://openalex.org/keywords/iterative-reconstruction","display_name":"Iterative reconstruction","score":0.4887799918651581},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4853045344352722},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3592761158943176},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35030004382133484}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.9195370674133301},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7215073704719543},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.557322084903717},{"id":"https://openalex.org/C109950114","wikidata":"https://www.wikidata.org/wiki/Q4464732","display_name":"3D reconstruction","level":2,"score":0.5352153778076172},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5037891268730164},{"id":"https://openalex.org/C141379421","wikidata":"https://www.wikidata.org/wiki/Q6094427","display_name":"Iterative reconstruction","level":2,"score":0.4887799918651581},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4853045344352722},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3592761158943176},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35030004382133484},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icip.2016.7532781","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icip.2016.7532781","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE International Conference on Image Processing (ICIP)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Sustainable cities and communities","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/11"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W363173866","https://openalex.org/W1977502972","https://openalex.org/W1986234520","https://openalex.org/W1996883058","https://openalex.org/W2044465660","https://openalex.org/W2054902886","https://openalex.org/W2066941820","https://openalex.org/W2084665040","https://openalex.org/W2085261163","https://openalex.org/W2105456967","https://openalex.org/W2119605622","https://openalex.org/W2121075186","https://openalex.org/W2122313934","https://openalex.org/W2147555557","https://openalex.org/W2151103935","https://openalex.org/W4302070335"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2000169967","https://openalex.org/W3165233182"],"abstract_inverted_index":{"Studying":[0],"tissue":[1],"structure":[2,12],"in":[3,7,108],"3D":[4,35,91],"is":[5,44,54,59],"beneficial":[6],"many":[8],"applications.":[9],"Reconstructing":[10],"the":[11,18,49,88,96,100],"based":[13,37,62],"on":[14,38,64],"histological":[15],"sections":[16,43],"has":[17],"advantages":[19],"of":[20,41,51,80,83,90,102],"high":[21],"resolution":[22],"and":[23,28,57],"compatibility":[24],"with":[25],"conventional":[26],"staining":[27],"interpretation":[29],"techniques.":[30],"However,":[31],"obtaining":[32],"an":[33],"accurate":[34],"reconstruction":[36],"a":[39,45,68,76,81],"sequence":[40],"2D":[42],"difficult":[46],"task.":[47],"Evaluating":[48],"accuracy":[50],"such":[52],"reconstructions":[53],"also":[55],"challenging":[56],"it":[58],"often":[60],"performed":[61],"only":[63],"visual":[65],"inspections":[66],"or":[67],"single":[69],"indirect":[70],"numerical":[71],"measure.":[72],"Here,":[73],"we":[74],"present":[75],"benchmarking":[77],"framework":[78,97],"composed":[79],"panel":[82],"complementary":[84],"metrics":[85],"for":[86],"assessing":[87],"quality":[89],"reconstructions.":[92],"We":[93],"then":[94],"apply":[95],"to":[98],"evaluate":[99],"performance":[101],"several":[103],"popular":[104],"image":[105],"registration":[106],"algorithms":[107],"this":[109],"context.":[110]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
