{"id":"https://openalex.org/W2037195043","doi":"https://doi.org/10.1109/icip.2013.6738838","title":"Watershed merge forest classification for electron microscopy image stack segmentation","display_name":"Watershed merge forest classification for electron microscopy image stack segmentation","publication_year":2013,"publication_date":"2013-09-01","ids":{"openalex":"https://openalex.org/W2037195043","doi":"https://doi.org/10.1109/icip.2013.6738838","mag":"2037195043","pmid":"https://pubmed.ncbi.nlm.nih.gov/25484631"},"language":"en","primary_location":{"id":"doi:10.1109/icip.2013.6738838","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icip.2013.6738838","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Image Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4255959","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100418161","display_name":"Ting Liu","orcid":"https://orcid.org/0000-0003-0749-064X"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ting Liu","raw_affiliation_strings":["Scientific Computing and Imaging Institute, University of Utah","Sci. Comput. & Imaging Inst., Univ. of Utah, Salt lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"Scientific Computing and Imaging Institute, University of Utah","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Sci. Comput. & Imaging Inst., Univ. of Utah, Salt lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053494387","display_name":"Mojtaba Seyedhosseini","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mojtaba Seyedhosseini","raw_affiliation_strings":["Scientific Computing and Imaging Institute, University of Utah","Sci. Comput. & Imaging Inst., Univ. of Utah, Salt lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"Scientific Computing and Imaging Institute, University of Utah","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Sci. Comput. & Imaging Inst., Univ. of Utah, Salt lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051156147","display_name":"Mark H. Ellisman","orcid":"https://orcid.org/0000-0001-8893-8455"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Ellisman","raw_affiliation_strings":["National Center for Microscopy and Imaging Research, University of California, San Diego","National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, CA, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Microscopy and Imaging Research, University of California, San Diego","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"National Center for Microscopy and Imaging Research, University of California, San Diego, La Jolla, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059125158","display_name":"Tolga Ta\u015fdizen","orcid":"https://orcid.org/0000-0001-6574-0366"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tolga Tasdizen","raw_affiliation_strings":["Scientific Computing and Imaging Institute, University of Utah","Sci. Comput. & Imaging Inst., Univ. of Utah, Salt lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"Scientific Computing and Imaging Institute, University of Utah","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Sci. Comput. & Imaging Inst., Univ. of Utah, Salt lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100418161"],"corresponding_institution_ids":["https://openalex.org/I223532165"],"apc_list":null,"apc_paid":null,"fwci":3.8415,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.93800623,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2013","issue":null,"first_page":"4069","last_page":"4073"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7079657912254333},{"id":"https://openalex.org/keywords/merge","display_name":"Merge (version control)","score":0.6591707468032837},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.658896267414093},{"id":"https://openalex.org/keywords/connectomics","display_name":"Connectomics","score":0.590835452079773},{"id":"https://openalex.org/keywords/watershed","display_name":"Watershed","score":0.5732932686805725},{"id":"https://openalex.org/keywords/scale-space-segmentation","display_name":"Scale-space segmentation","score":0.5528655052185059},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5403836369514465},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5365201830863953},{"id":"https://openalex.org/keywords/minimum-spanning-tree-based-segmentation","display_name":"Minimum spanning tree-based segmentation","score":0.5162537097930908},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4221768081188202},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3466462790966034},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32431983947753906},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.12875646352767944},{"id":"https://openalex.org/keywords/connectome","display_name":"Connectome","score":0.07481548190116882}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7079657912254333},{"id":"https://openalex.org/C197129107","wikidata":"https://www.wikidata.org/wiki/Q1921621","display_name":"Merge (version control)","level":2,"score":0.6591707468032837},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.658896267414093},{"id":"https://openalex.org/C2779097318","wikidata":"https://www.wikidata.org/wiki/Q2993446","display_name":"Connectomics","level":4,"score":0.590835452079773},{"id":"https://openalex.org/C150547873","wikidata":"https://www.wikidata.org/wiki/Q947851","display_name":"Watershed","level":2,"score":0.5732932686805725},{"id":"https://openalex.org/C65885262","wikidata":"https://www.wikidata.org/wiki/Q7429708","display_name":"Scale-space segmentation","level":4,"score":0.5528655052185059},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5403836369514465},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5365201830863953},{"id":"https://openalex.org/C42314347","wikidata":"https://www.wikidata.org/wiki/Q6865488","display_name":"Minimum spanning tree-based segmentation","level":5,"score":0.5162537097930908},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4221768081188202},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3466462790966034},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32431983947753906},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.12875646352767944},{"id":"https://openalex.org/C45715564","wikidata":"https://www.wikidata.org/wiki/Q1292103","display_name":"Connectome","level":3,"score":0.07481548190116882},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C3018011982","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Functional connectivity","level":2,"score":0.0},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/icip.2013.6738838","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icip.2013.6738838","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE International Conference on Image Processing","raw_type":"proceedings-article"},{"id":"pmid:25484631","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25484631","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Conference on Computer Vision","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt3j09m4ww","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/3j09m4ww","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4255959","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4255959","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc IEEE Int Conf Comput Vis","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4255959","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4255959","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc IEEE Int Conf Comput Vis","raw_type":"Text"},"sustainable_development_goals":[{"score":0.7900000214576721,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1607798596","https://openalex.org/W1871425898","https://openalex.org/W1969013163","https://openalex.org/W2088256340","https://openalex.org/W2104066896","https://openalex.org/W2104145949","https://openalex.org/W2110158442","https://openalex.org/W2110516302","https://openalex.org/W2115451053","https://openalex.org/W2124386111","https://openalex.org/W2129981175","https://openalex.org/W2136378950","https://openalex.org/W2136747949","https://openalex.org/W2146693559","https://openalex.org/W2156574284","https://openalex.org/W2911964244","https://openalex.org/W6636316395","https://openalex.org/W6676607573","https://openalex.org/W6683108301"],"related_works":["https://openalex.org/W2185902295","https://openalex.org/W2790780243","https://openalex.org/W2551987074","https://openalex.org/W2355564272","https://openalex.org/W2559983475","https://openalex.org/W3144569342","https://openalex.org/W2343417271","https://openalex.org/W80586315","https://openalex.org/W1558398159","https://openalex.org/W2030441184"],"abstract_inverted_index":{"Automated":[0],"electron":[1],"microscopy":[2],"(EM)":[3],"image":[4,39,135],"analysis":[5],"techniques":[6],"can":[7],"be":[8],"tremendously":[9],"helpful":[10],"for":[11,33],"connectomics":[12],"research.":[13],"In":[14],"this":[15],"paper,":[16],"we":[17],"extend":[18],"our":[19,120],"previous":[20],"work":[21],"[1]":[22],"and":[23],"propose":[24],"a":[25],"fully":[26],"automatic":[27],"method":[28,121],"to":[29,71,89,108,123],"utilize":[30],"inter-section":[31,82],"information":[32,83],"intra-section":[34],"neuron":[35],"segmentation":[36,112,125],"of":[37,59,93,113,133],"EM":[38,134],"stacks.":[40],"A":[41,66],"watershed":[42,49],"merge":[43,99],"forest":[44,100],"is":[45,69,87],"built":[46],"via":[47],"the":[48,55,64,73,91,98,110,114],"transform":[50],"with":[51,105,130],"each":[52],"tree":[53,94],"representing":[54],"region":[56,76],"merging":[57],"hierarchy":[58],"one":[60],"2D":[61],"section":[62,67],"in":[63],"stack.":[65,116],"classifier":[68],"learned":[70],"identify":[72],"most":[74],"likely":[75],"correspondence":[77,86],"between":[78],"adjacent":[79],"sections.":[80],"The":[81],"from":[84],"such":[85],"incorporated":[88],"update":[90],"potentials":[92,103],"nodes.":[95],"We":[96,117],"resolve":[97],"using":[101],"these":[102],"together":[104],"consistency":[106],"constraints":[107],"acquire":[109],"final":[111],"whole":[115],"demonstrate":[118],"that":[119],"leads":[122],"notable":[124],"accuracy":[126],"improvement":[127],"by":[128],"experimenting":[129],"two":[131],"types":[132],"data":[136],"sets.":[137]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}