{"id":"https://openalex.org/W2051022335","doi":"https://doi.org/10.1109/icip.2012.6467483","title":"Automated colitis detection from endoscopic biopsies as a tissue screening tool in diagnostic pathology","display_name":"Automated colitis detection from endoscopic biopsies as a tissue screening tool in diagnostic pathology","publication_year":2012,"publication_date":"2012-09-01","ids":{"openalex":"https://openalex.org/W2051022335","doi":"https://doi.org/10.1109/icip.2012.6467483","mag":"2051022335","pmid":"https://pubmed.ncbi.nlm.nih.gov/25267923"},"language":"en","primary_location":{"id":"doi:10.1109/icip.2012.6467483","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icip.2012.6467483","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 19th IEEE International Conference on Image Processing","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/journal_contribution/Automated_colitis_detection_from_endoscopic_biopsies_as_a_tissue_screening_tool_in_diagnostic_pathology/6468380","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006151881","display_name":"Michael T. McCann","orcid":"https://orcid.org/0000-0001-7645-252X"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael T. McCann","raw_affiliation_strings":["Dept. of BME and Center for Bioimage Informatics, Carnegie Mellon University, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of BME and Center for Bioimage Informatics, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050181755","display_name":"Ramamurthy Bhagavatula","orcid":null},"institutions":[{"id":"https://openalex.org/I4210122954","display_name":"MIT Lincoln Laboratory","ror":"https://ror.org/022z6jk58","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramamurthy Bhagavatula","raw_affiliation_strings":["Massachusetts Institute of Technology Lincoln Laboratory, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Massachusetts Institute of Technology Lincoln Laboratory, Boston, MA, USA","institution_ids":["https://openalex.org/I4210122954","https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062903532","display_name":"Matthew Fickus","orcid":"https://orcid.org/0000-0002-4295-1475"},"institutions":[{"id":"https://openalex.org/I55061410","display_name":"U.S. Air Force Institute of Technology","ror":"https://ror.org/03f9f1d95","country_code":"US","type":"education","lineage":["https://openalex.org/I1294991024","https://openalex.org/I1330347796","https://openalex.org/I1330347796","https://openalex.org/I2802362820","https://openalex.org/I4210089612","https://openalex.org/I4210102105","https://openalex.org/I4210102105","https://openalex.org/I55061410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew C. Fickus","raw_affiliation_strings":["Dept. of Mathematics and Statistics, Air Force Institute of Technology Wright-Patterson AFB, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Mathematics and Statistics, Air Force Institute of Technology Wright-Patterson AFB, USA","institution_ids":["https://openalex.org/I55061410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052936626","display_name":"John A. Ozolek","orcid":"https://orcid.org/0000-0002-7015-6401"},"institutions":[{"id":"https://openalex.org/I4210130600","display_name":"Children's Hospital of Pittsburgh","ror":"https://ror.org/03763ep67","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210098814","https://openalex.org/I4210130600","https://openalex.org/I4210134769"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John A. Ozolek","raw_affiliation_strings":["Dept. of Pathology, Children's Hospital of Pittsburgh University of Pittsburgh School of Medicine, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Pathology, Children's Hospital of Pittsburgh University of Pittsburgh School of Medicine, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I4210130600"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101863660","display_name":"Jelena Kova\u010devi\u0107","orcid":"https://orcid.org/0000-0003-0139-2803"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jelena Kovacevic","raw_affiliation_strings":["Dept. of BME and Center for Bioimage Informatics, Carnegie Mellon University, Pittsburgh, PA, USA ; Dept. of ECE, Carnegie Mellon University, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of BME and Center for Bioimage Informatics, Carnegie Mellon University, Pittsburgh, PA, USA ; Dept. of ECE, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2012","issue":null,"first_page":"2809","last_page":"2812"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6779961585998535},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.648086428642273},{"id":"https://openalex.org/keywords/colitis","display_name":"Colitis","score":0.5958660244941711},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5824093818664551},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5730753540992737},{"id":"https://openalex.org/keywords/histology","display_name":"Histology","score":0.49172404408454895},{"id":"https://openalex.org/keywords/automation","display_name":"Automation","score":0.46204397082328796},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.4619015157222748},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.4323037564754486},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32189369201660156},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.26719582080841064},{"id":"https://openalex.org/keywords/gastroenterology","display_name":"Gastroenterology","score":0.09231352806091309}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6779961585998535},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.648086428642273},{"id":"https://openalex.org/C2775862500","wikidata":"https://www.wikidata.org/wiki/Q2453464","display_name":"Colitis","level":2,"score":0.5958660244941711},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5824093818664551},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5730753540992737},{"id":"https://openalex.org/C57742111","wikidata":"https://www.wikidata.org/wiki/Q7168","display_name":"Histology","level":2,"score":0.49172404408454895},{"id":"https://openalex.org/C115901376","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automation","level":2,"score":0.46204397082328796},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.4619015157222748},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.4323037564754486},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32189369201660156},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.26719582080841064},{"id":"https://openalex.org/C90924648","wikidata":"https://www.wikidata.org/wiki/Q120569","display_name":"Gastroenterology","level":1,"score":0.09231352806091309},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.1109/icip.2012.6467483","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icip.2012.6467483","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 19th IEEE International Conference on Image Processing","raw_type":"proceedings-article"},{"id":"pmid:25267923","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25267923","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. International Conference on Image Processing","raw_type":null},{"id":"pmh:oai:repository.cmu.edu:ece-1301","is_oa":false,"landing_page_url":"http://repository.cmu.edu/ece/302","pdf_url":null,"source":{"id":"https://openalex.org/S4306400668","display_name":"Research Showcase @ Carnegie Mellon University (Carnegie Mellon University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I74973139","host_organization_name":"Carnegie Mellon University","host_organization_lineage":["https://openalex.org/I74973139"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Department of Electrical and Computer Engineering","raw_type":"text"},{"id":"pmh:doi:10.1184/r1/6468380","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal contribution"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1012.7401","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1012.7401","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://repository.cmu.edu/cgi/viewcontent.cgi?article%3D1301%26context%3Dece","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.659.311","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.659.311","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://jelena.ece.cmu.edu/repository/conferences/12_09_Icip_Histology.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3145919","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4176929","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/6468380","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Automated_colitis_detection_from_endoscopic_biopsies_as_a_tissue_screening_tool_in_diagnostic_pathology/6468380","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"doi:10.1184/r1/6468380.v1","is_oa":true,"landing_page_url":"https://doi.org/10.1184/r1/6468380.v1","pdf_url":null,"source":{"id":"https://openalex.org/S7407050927","display_name":"KiltHub Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/6468380","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/Automated_colitis_detection_from_endoscopic_biopsies_as_a_tissue_screening_tool_in_diagnostic_pathology/6468380","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6200000047683716,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G6575369514","display_name":null,"funder_award_id":"R03 EB009875","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"}],"funders":[{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W184307442","https://openalex.org/W1516417927","https://openalex.org/W1972552638","https://openalex.org/W1986970255","https://openalex.org/W2014323679","https://openalex.org/W2026526178","https://openalex.org/W2097353189","https://openalex.org/W2110119381","https://openalex.org/W2124155137","https://openalex.org/W2139480020","https://openalex.org/W2162965487"],"related_works":["https://openalex.org/W2399181824","https://openalex.org/W1975767702","https://openalex.org/W2762780254","https://openalex.org/W2349784553","https://openalex.org/W1497328854","https://openalex.org/W3022596247","https://openalex.org/W384105598","https://openalex.org/W3128797991","https://openalex.org/W2601444686","https://openalex.org/W4307058054"],"abstract_inverted_index":{"We":[0,100],"present":[1],"a":[2,27,56,62],"method":[3],"for":[4,16,64],"identifying":[5],"colitis":[6,98],"in":[7,22,30],"colon":[8,46],"biopsies":[9],"as":[10,42],"an":[11],"extension":[12],"of":[13,20,45,83],"our":[14,73,108],"framework":[15,105],"the":[17,43,78,97,102],"automated":[18],"identification":[19],"tissues":[21],"histology":[23],"images.":[24],"Histology":[25],"is":[26],"critical":[28],"tool":[29],"both":[31],"clinical":[32],"and":[33,130],"research":[34],"applications,":[35],"yet":[36],"even":[37],"mundane":[38],"histological":[39],"analysis,":[40],"such":[41],"screening":[44],"biopsies,":[47],"must":[48],"be":[49],"carried":[50],"out":[51],"by":[52,76,90,96],"highly-trained":[53],"pathologists":[54],"at":[55],"high":[57],"cost":[58],"per":[59],"hour,":[60],"indicating":[61],"niche":[63],"potential":[65],"automation.":[66],"To":[67],"this":[68],"end,":[69],"we":[70],"build":[71],"upon":[72],"previous":[74],"work":[75],"extending":[77],"histopathology":[79],"vocabulary":[80],"(a":[81],"set":[82],"features":[84,94],"based":[85],"on":[86],"visual":[87],"cues":[88],"used":[89],"pathologists)":[91],"with":[92,128],"new":[93,118],"driven":[95],"application.":[99],"use":[101],"multiple-instance":[103],"learning":[104],"to":[106,111,123],"allow":[107],"pixel-level":[109],"classifier":[110],"learn":[112],"from":[113],"image-level":[114],"training":[115],"labels.":[116],"The":[117],"system":[119],"achieves":[120],"accuracy":[121],"comparable":[122],"state-of-the-art":[124],"biological":[125],"image":[126],"classifiers":[127],"fewer":[129],"more":[131],"intuitive":[132],"features.":[133]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
