{"id":"https://openalex.org/W2096331886","doi":"https://doi.org/10.1109/icip.2008.4712130","title":"Evaluation and benchmark for biological image segmentation","display_name":"Evaluation and benchmark for biological image segmentation","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2096331886","doi":"https://doi.org/10.1109/icip.2008.4712130","mag":"2096331886"},"language":"en","primary_location":{"id":"doi:10.1109/icip.2008.4712130","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icip.2008.4712130","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 15th IEEE International Conference on Image Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018120737","display_name":"Elisa Drelie Gelasca","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Elisa Drelie Gelasca","raw_affiliation_strings":["Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California, Santa Barbara, USA"],"affiliations":[{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102141441","display_name":"Jiyun Byun","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiyun Byun","raw_affiliation_strings":["Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California, Santa Barbara, USA","Dept. of Electr. & Comput. Eng., Univ. of California, Santa Barbara, CA#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Univ. of California, Santa Barbara, CA#TAB#","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091089738","display_name":"Bogus\u0142aw Obara","orcid":"https://orcid.org/0000-0003-4084-7778"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Boguslaw Obara","raw_affiliation_strings":["Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California, Santa Barbara, USA","Dept. of Electr. & Comput. Eng., Univ. of California, Santa Barbara, CA#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Univ. of California, Santa Barbara, CA#TAB#","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071938464","display_name":"B.S. Manjunath","orcid":"https://orcid.org/0000-0003-2804-3611"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B.S. Manjunath","raw_affiliation_strings":["Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California, Santa Barbara, USA","Dept. of Electr. & Comput. Eng., Univ. of California, Santa Barbara, CA#TAB#"],"affiliations":[{"raw_affiliation_string":"Center for Bio-Image Informatics, Electrical and Computer Engineering Department, University of California, Santa Barbara, USA","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Dept. of Electr. & Comput. Eng., Univ. of California, Santa Barbara, CA#TAB#","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018120737"],"corresponding_institution_ids":["https://openalex.org/I154570441"],"apc_list":null,"apc_paid":null,"fwci":3.3483,"has_fulltext":false,"cited_by_count":151,"citation_normalized_percentile":{"value":0.92068707,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"1816","last_page":"1819"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7877014875411987},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.78336101770401},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.7367359399795532},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6621061563491821},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.6541515588760376},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6244500875473022},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5157325863838196},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.5150558948516846},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5078638195991516},{"id":"https://openalex.org/keywords/segmentation-based-object-categorization","display_name":"Segmentation-based object categorization","score":0.48108288645744324},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.4524591565132141},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4458494782447815},{"id":"https://openalex.org/keywords/scale-space-segmentation","display_name":"Scale-space segmentation","score":0.4116480350494385},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3730486035346985},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.35822588205337524},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3354915976524353}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7877014875411987},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.78336101770401},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.7367359399795532},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6621061563491821},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.6541515588760376},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6244500875473022},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5157325863838196},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.5150558948516846},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5078638195991516},{"id":"https://openalex.org/C25694479","wikidata":"https://www.wikidata.org/wiki/Q7446278","display_name":"Segmentation-based object categorization","level":5,"score":0.48108288645744324},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.4524591565132141},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4458494782447815},{"id":"https://openalex.org/C65885262","wikidata":"https://www.wikidata.org/wiki/Q7429708","display_name":"Scale-space segmentation","level":4,"score":0.4116480350494385},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3730486035346985},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.35822588205337524},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3354915976524353},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/icip.2008.4712130","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icip.2008.4712130","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 15th IEEE International Conference on Image Processing","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.139.3871","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.139.3871","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://vision.ece.ucsb.edu/publications/elisa_ICIP08.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332434","display_name":"ExxonMobil Research and Engineering Company","ror":"https://ror.org/01xcepn55"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1966691944","https://openalex.org/W2033419168","https://openalex.org/W2116927907","https://openalex.org/W2120281095","https://openalex.org/W2121927366","https://openalex.org/W2125012216","https://openalex.org/W2163303168","https://openalex.org/W2189343552","https://openalex.org/W6684050132","https://openalex.org/W6687263807"],"related_works":["https://openalex.org/W3144569342","https://openalex.org/W2185902295","https://openalex.org/W2945274617","https://openalex.org/W2372421320","https://openalex.org/W2057775483","https://openalex.org/W2041871225","https://openalex.org/W2386644571","https://openalex.org/W4205800335","https://openalex.org/W2387793296","https://openalex.org/W2118381968"],"abstract_inverted_index":{"This":[0],"paper":[1],"describes":[2],"ongoing":[3],"work":[4,85],"on":[5,98],"creating":[6,45],"a":[7,56,99,182],"benchmarking":[8],"and":[9,38,105,112,176],"validation":[10],"dataset":[11,27],"for":[12,44,71,86],"biological":[13,21],"image":[14,36,143,150],"segmentation.":[15],"While":[16],"the":[17,26,50,65,72,149,155,169],"primary":[18],"target":[19],"is":[20,69,96,153,186],"images,":[22,132],"we":[23],"believe":[24],"that":[25,52,95,154,163,185],"would":[28,84],"be":[29,165],"of":[30,59,102,120,134,140,171],"help":[31],"to":[32,75,81,127,129,142,148,167],"researchers":[33,152],"working":[34],"in":[35,40,64,123],"segmentation":[37,61],"tracking":[39],"general.":[41],"The":[42,174],"motivation":[43],"this":[46],"resource":[47],"comes":[48,157],"from":[49,125],"observation":[51],"while":[53],"there":[54],"are":[55,178],"large":[57],"number":[58],"effective":[60,97],"methods":[62,83,107],"available":[63,187],"research":[66],"literature,":[67],"it":[68],"difficult":[70],"application":[73,103],"scientists":[74],"make":[76],"an":[77],"informed":[78],"choice":[79],"as":[80],"what":[82],"her":[87],"particular":[88,146],"problem.":[89],"No":[90],"one":[91],"single":[92],"tool":[93],"exists":[94],"diverse":[100],"set":[101,139],"contexts":[104],"different":[106,118,172],"have":[108],"their":[109,137],"own":[110,138],"strengths":[111],"limitations.":[113],"We":[114],"describe":[115],"below":[116],"three":[117],"classes":[119],"data,":[121],"ranging":[122],"scale":[124],"subcellular":[126],"cellular":[128],"tissue":[130],"level":[131],"each":[133],"which":[135],"pose":[136],"challenges":[141],"analysis.":[144],"Of":[145],"value":[147],"processing":[151],"data":[156],"with":[158],"associated":[159],"ground":[160],"truth":[161],"information":[162],"can":[164],"used":[166],"evaluate":[168],"effectiveness":[170],"methods.":[173],"analysis":[175],"evaluation":[177],"also":[179],"integrated":[180],"into":[181],"database":[183],"framework":[184],"online":[188],"at":[189],"http://dough.ece.ucsb.edu.":[190]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
