{"id":"https://openalex.org/W2989861740","doi":"https://doi.org/10.1109/ichi.2019.8904601","title":"Information Extraction for Populating Lung Cancer Clinical Research Data","display_name":"Information Extraction for Populating Lung Cancer Clinical Research Data","publication_year":2019,"publication_date":"2019-06-01","ids":{"openalex":"https://openalex.org/W2989861740","doi":"https://doi.org/10.1109/ichi.2019.8904601","mag":"2989861740","pmid":"https://pubmed.ncbi.nlm.nih.gov/32537571"},"language":"en","primary_location":{"id":"doi:10.1109/ichi.2019.8904601","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ichi.2019.8904601","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Healthcare Informatics (ICHI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7293380","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100406711","display_name":"Liwei Wang","orcid":"https://orcid.org/0000-0001-9970-8604"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Liwei Wang","raw_affiliation_strings":["Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016252333","display_name":"Lei Luo","orcid":"https://orcid.org/0000-0003-0714-5504"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lei Luo","raw_affiliation_strings":["Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080116611","display_name":"Yanshan Wang","orcid":"https://orcid.org/0000-0003-4433-7839"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanshan Wang","raw_affiliation_strings":["Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080514181","display_name":"Jason A. Wampfler","orcid":"https://orcid.org/0009-0007-6918-8135"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason A. Wampfler","raw_affiliation_strings":["Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086376470","display_name":"Ping Yang","orcid":"https://orcid.org/0000-0002-8588-847X"},"institutions":[{"id":"https://openalex.org/I4210125099","display_name":"Mayo Clinic in Arizona","ror":"https://ror.org/03jp40720","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210125099"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ping Yang","raw_affiliation_strings":["Mayo Clinic,Department of health Sciences Research,Scottsdale,AZ,U.S","Department of health Sciences Research, Mayo Clinic, Scottsdale, AZ, U.S"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic,Department of health Sciences Research,Scottsdale,AZ,U.S","institution_ids":["https://openalex.org/I4210125099"]},{"raw_affiliation_string":"Department of health Sciences Research, Mayo Clinic, Scottsdale, AZ, U.S","institution_ids":["https://openalex.org/I4210125099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic,Department of health Sciences Research,Rochester,MN,U.S","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of health Sciences Research, Mayo Clinic, Rochester, MN, U.S","institution_ids":["https://openalex.org/I4210146710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100406711"],"corresponding_institution_ids":["https://openalex.org/I4210146710"],"apc_list":null,"apc_paid":null,"fwci":0.2912,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.68066982,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2019","issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.7678413391113281},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.6706141233444214},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.6128865480422974},{"id":"https://openalex.org/keywords/stage","display_name":"Stage (stratigraphy)","score":0.5367637276649475},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5221959948539734},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4410002827644348},{"id":"https://openalex.org/keywords/radiation-therapy","display_name":"Radiation therapy","score":0.44019028544425964},{"id":"https://openalex.org/keywords/epidemiology","display_name":"Epidemiology","score":0.423086017370224},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.407693088054657},{"id":"https://openalex.org/keywords/medical-physics","display_name":"Medical physics","score":0.37117940187454224},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.3646213412284851},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.2721348702907562},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.15655314922332764}],"concepts":[{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.7678413391113281},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.6706141233444214},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6128865480422974},{"id":"https://openalex.org/C146357865","wikidata":"https://www.wikidata.org/wiki/Q1123245","display_name":"Stage (stratigraphy)","level":2,"score":0.5367637276649475},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5221959948539734},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4410002827644348},{"id":"https://openalex.org/C509974204","wikidata":"https://www.wikidata.org/wiki/Q180507","display_name":"Radiation therapy","level":2,"score":0.44019028544425964},{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.423086017370224},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.407693088054657},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.37117940187454224},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.3646213412284851},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2721348702907562},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.15655314922332764},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/ichi.2019.8904601","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ichi.2019.8904601","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Healthcare Informatics (ICHI)","raw_type":"proceedings-article"},{"id":"pmid:32537571","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32537571","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE International Conference on Healthcare Informatics. IEEE International Conference on Healthcare Informatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7293380","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7293380","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc (IEEE Int Conf Healthc Inform)","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:7293380","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7293380","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc (IEEE Int Conf Healthc Inform)","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.49000000953674316}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W86609720","https://openalex.org/W1528605240","https://openalex.org/W2112796928","https://openalex.org/W2140302476","https://openalex.org/W2141599568","https://openalex.org/W2785424534","https://openalex.org/W2787031888","https://openalex.org/W2963923670","https://openalex.org/W6603505381","https://openalex.org/W6680890276","https://openalex.org/W6747717531"],"related_works":["https://openalex.org/W2397677514","https://openalex.org/W2914293784","https://openalex.org/W2407382301","https://openalex.org/W1495820741","https://openalex.org/W4323056170","https://openalex.org/W2126732312","https://openalex.org/W2401910071","https://openalex.org/W2189429352","https://openalex.org/W4302329558","https://openalex.org/W1971571384"],"abstract_inverted_index":{"Lung":[0],"cancer":[1,7,57,116],"is":[2],"the":[3,9,75,91,103],"second":[4],"most":[5],"common":[6],"and":[8,33,48,52,67,81,87,90,97,105],"wide":[10],"adoption":[11],"of":[12,20,107],"electronic":[13],"health":[14],"records":[15],"(EHRs)":[16],"offers":[17],"a":[18,35],"potential":[19],"accelerating":[21],"cohort-related":[22],"epidemiological":[23],"studies":[24],"using":[25],"informatics":[26],"approaches.":[27],"In":[28],"this":[29],"study,":[30],"we":[31],"developed":[32],"evaluated":[34],"natural":[36],"language":[37],"processing":[38],"(NLP)":[39],"system":[40],"to":[41],"extract":[42],"information":[43,110],"on":[44],"stage,":[45,78],"histology,":[46,79],"grade":[47],"therapies":[49,82],"(chemotherapy,":[50],"radiotherapy":[51],"surgery)":[53],"automatically":[54],"for":[55,77,114],"lung":[56,115],"patients":[58],"from":[59,111],"clinical":[60,63,112],"narratives":[61,113],"including":[62],"notes,":[64],"pathology":[65],"reports":[66],"surgery":[68],"reports.":[69],"Evaluation":[70],"showed":[71],"promising":[72],"results":[73],"with":[74],"recalls":[76],"grade,":[80],"achieving":[83],"89%,":[84,95],"98%,":[85],"80%,":[86],"100%":[88,98],"respectively":[89],"precisions":[92],"were":[93],"71%,":[94],"90%,":[96],"respectively.":[99],"This":[100],"study":[101],"demonstrated":[102],"feasibility":[104],"accuracy":[106],"extracting":[108],"related":[109],"research.":[117]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
