{"id":"https://openalex.org/W4390693317","doi":"https://doi.org/10.1109/icecs58634.2023.10382758","title":"Optimizing Self-Organizing Maps for Bacterial Genome Identification on Parallel Ultra-Low-Power Platforms","display_name":"Optimizing Self-Organizing Maps for Bacterial Genome Identification on Parallel Ultra-Low-Power Platforms","publication_year":2023,"publication_date":"2023-12-04","ids":{"openalex":"https://openalex.org/W4390693317","doi":"https://doi.org/10.1109/icecs58634.2023.10382758"},"language":"en","primary_location":{"id":"doi:10.1109/icecs58634.2023.10382758","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/icecs58634.2023.10382758","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 30th IEEE International Conference on Electronics, Circuits and Systems (ICECS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://cris.unibo.it/bitstream/11585/954827/3/ICECS_2023__Bacterial_Genome_Identification_Using_Self_Organizing_Map_implemented_on_the_GAP9_POSTPRINT.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008803211","display_name":"Seyed Ahmad Mirsalari","orcid":"https://orcid.org/0000-0001-8013-2414"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Seyed Ahmad Mirsalari","raw_affiliation_strings":["University of Bologna,Bologna,Italy","University of Bologna, Bologna, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bologna,Bologna,Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025366779","display_name":"S. Aryana Yousefzadeh","orcid":"https://orcid.org/0000-0003-2842-7121"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Saba Yousefzadeh","raw_affiliation_strings":["KTH Royal Institute of Technology,Stockholm,Sweden","KTH Royal Institute of Technology, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KTH Royal Institute of Technology,Stockholm,Sweden","institution_ids":["https://openalex.org/I86987016"]},{"raw_affiliation_string":"KTH Royal Institute of Technology, Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004842257","display_name":"Giuseppe Tagliavini","orcid":"https://orcid.org/0000-0002-9221-4633"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Tagliavini","raw_affiliation_strings":["University of Bologna,Bologna,Italy","University of Bologna, Bologna, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bologna,Bologna,Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048826742","display_name":"Dimitrios Stathis","orcid":"https://orcid.org/0000-0002-5697-4272"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Dimitrios Stathis","raw_affiliation_strings":["KTH Royal Institute of Technology,Stockholm,Sweden","KTH Royal Institute of Technology, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KTH Royal Institute of Technology,Stockholm,Sweden","institution_ids":["https://openalex.org/I86987016"]},{"raw_affiliation_string":"KTH Royal Institute of Technology, Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026355063","display_name":"Ahmed Hemani","orcid":"https://orcid.org/0000-0003-0565-9376"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Ahmed Hemani","raw_affiliation_strings":["KTH Royal Institute of Technology,Stockholm,Sweden","KTH Royal Institute of Technology, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KTH Royal Institute of Technology,Stockholm,Sweden","institution_ids":["https://openalex.org/I86987016"]},{"raw_affiliation_string":"KTH Royal Institute of Technology, Stockholm, Sweden","institution_ids":["https://openalex.org/I86987016"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.3402,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.83610598,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7892279624938965},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.7646222710609436},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.6273055076599121},{"id":"https://openalex.org/keywords/efficient-energy-use","display_name":"Efficient energy use","score":0.6235763430595398},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5950208306312561},{"id":"https://openalex.org/keywords/memory-footprint","display_name":"Memory footprint","score":0.5620509386062622},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5375532507896423},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4702065587043762},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4590114951133728},{"id":"https://openalex.org/keywords/floating-point","display_name":"Floating point","score":0.4261713922023773},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.41018882393836975},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.40159016847610474},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.20549216866493225},{"id":"https://openalex.org/keywords/wireless","display_name":"Wireless","score":0.18764913082122803}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7892279624938965},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7646222710609436},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.6273055076599121},{"id":"https://openalex.org/C2742236","wikidata":"https://www.wikidata.org/wiki/Q924713","display_name":"Efficient energy use","level":2,"score":0.6235763430595398},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5950208306312561},{"id":"https://openalex.org/C74912251","wikidata":"https://www.wikidata.org/wiki/Q6815727","display_name":"Memory footprint","level":2,"score":0.5620509386062622},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5375532507896423},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4702065587043762},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4590114951133728},{"id":"https://openalex.org/C84211073","wikidata":"https://www.wikidata.org/wiki/Q117879","display_name":"Floating point","level":2,"score":0.4261713922023773},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.41018882393836975},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.40159016847610474},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.20549216866493225},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.18764913082122803},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/icecs58634.2023.10382758","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/icecs58634.2023.10382758","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 30th IEEE International Conference on Electronics, Circuits and Systems (ICECS)","raw_type":"proceedings-article"},{"id":"pmh:oai:cris.unibo.it:11585/954827","is_oa":true,"landing_page_url":"https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=10382758","pdf_url":"https://cris.unibo.it/bitstream/11585/954827/3/ICECS_2023__Bacterial_Genome_Identification_Using_Self_Organizing_Map_implemented_on_the_GAP9_POSTPRINT.pdf","source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:zenodo.org:10684571","is_oa":true,"landing_page_url":"https://doi.org/10.1109/ICECS58634.2023.10382758","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"}],"best_oa_location":{"id":"pmh:oai:cris.unibo.it:11585/954827","is_oa":true,"landing_page_url":"https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=10382758","pdf_url":"https://cris.unibo.it/bitstream/11585/954827/3/ICECS_2023__Bacterial_Genome_Identification_Using_Self_Organizing_Map_implemented_on_the_GAP9_POSTPRINT.pdf","source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.8899999856948853,"display_name":"Affordable and clean energy"}],"awards":[{"id":"https://openalex.org/G2001806450","display_name":null,"funder_award_id":"H2020-MSCA-ITN","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2030651639","display_name":"Approximate Computing for Power and Energy Optimisation","funder_award_id":"956090","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3345895242","display_name":null,"funder_award_id":"H2020-MSCA","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G4012842235","display_name":null,"funder_award_id":"MSCA\u2010ITN\u20102020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"Horizon2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4937468798","display_name":null,"funder_award_id":"H2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6404193548","display_name":null,"funder_award_id":"956090","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6529851592","display_name":null,"funder_award_id":"H2020-MSCA-ITN-2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7984235579","display_name":null,"funder_award_id":"H2020-MSCA-ITN","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G8512683158","display_name":null,"funder_award_id":"H2020-MSCA","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390693317.pdf"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1990517717","https://openalex.org/W2143220063","https://openalex.org/W2170695679","https://openalex.org/W2244005500","https://openalex.org/W2554131156","https://openalex.org/W2607477256","https://openalex.org/W2761132374","https://openalex.org/W2763421725","https://openalex.org/W2770593197","https://openalex.org/W2801629875","https://openalex.org/W2909263076","https://openalex.org/W2946705112","https://openalex.org/W2963255460","https://openalex.org/W2973296559","https://openalex.org/W3113606433","https://openalex.org/W3203242999","https://openalex.org/W4242364555","https://openalex.org/W4281652308","https://openalex.org/W4297812065","https://openalex.org/W4362510878","https://openalex.org/W6651700774","https://openalex.org/W6745245109","https://openalex.org/W6838941422","https://openalex.org/W6843734122"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W2146343568","https://openalex.org/W98480971","https://openalex.org/W4221139464","https://openalex.org/W4289827464","https://openalex.org/W4289729660","https://openalex.org/W2887023857","https://openalex.org/W2950000202","https://openalex.org/W4321472478"],"abstract_inverted_index":{"Pathogenic":[0],"bacteria":[1],"significantly":[2],"threaten":[3],"human":[4],"health,":[5],"highlighting":[6],"the":[7,22,55,67,80,87,150,181],"need":[8],"for":[9,14,29,65],"precise":[10],"and":[11,98,125,131,167],"efficient":[12],"methods":[13,64],"swiftly":[15],"identifying":[16],"bacterial":[17],"species.":[18],"This":[19],"paper":[20],"addresses":[21],"challenges":[23],"associated":[24],"with":[25,35,75,138],"performing":[26],"genomics":[27],"computations":[28],"pathogen":[30],"identification":[31],"on":[32,54,70,94,128,143,154],"embedded":[33],"systems":[34],"limited":[36],"computational":[37],"power.":[38],"We":[39,60],"propose":[40,61],"an":[41],"optimized":[42],"implementation":[43,142,152],"of":[44,89,119],"Self-Organizing":[45],"Maps":[46],"(SOMs)":[47],"targeting":[48],"a":[49,71,109,117,139,144,168],"parallel":[50,72,114],"ultra-low-power":[51],"platform":[52],"based":[53],"RISC-V":[56],"instruction":[57],"set":[58],"architecture.":[59],"two":[62],"mapping":[63],"implementing":[66],"SOM":[68],"algorithm":[69],"cluster,":[73],"coupled":[74],"software":[76],"techniques":[77],"to":[78,83,175],"improve":[79],"throughput.":[81],"Orthogonally":[82],"parallelization,":[84],"we":[85],"investigate":[86],"impact":[88],"smaller-than-32-bit":[90],"floating-point":[91],"formats":[92,107],"(smallFloats)":[93],"energy":[95,160],"savings,":[96],"precision,":[97],"performance.":[99],"Our":[100],"experimental":[101],"results":[102],"show":[103],"that":[104],"all":[105],"smallFloat":[106],"exhibit":[108],"100%":[110],"classification":[111],"accuracy.":[112],"The":[113],"variants":[115],"achieve":[116],"speed-up":[118,183],"$1.98":[120],"\\times":[121],",":[122],"3.79":[123],"\\times$,":[124],"$6.83":[126],"\\times$":[127,159,165],"2,":[129],"4,":[130],"8":[132],"cores,":[133],"respectively.":[134],"Comparing":[135],"our":[136],"design":[137],"16-bit":[140],"fixed-point":[141],"coarse":[145],"grain":[146],"reconfigurable":[147],"architecture":[148],"(CGRA),":[149],"FP8":[151,178],"achieves,":[153],"average,":[155],"$1":[156,162],".":[157,163],"42":[158],"efficiency,":[161],"51":[164],"speedup,":[166],"50%":[169],"reduction":[170],"in":[171],"memory":[172],"footprint":[173],"compared":[174],"CGRA.":[176],"Furthermore,":[177],"vectorization":[179],"increases":[180],"average":[182],"by":[184],"$2.5":[185],"\\times$.":[186]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-03T07:22:36.454288","created_date":"2025-10-10T00:00:00"}
