{"id":"https://openalex.org/W1603628816","doi":"https://doi.org/10.1109/icdsp.2015.7251934","title":"Large-scale dynamic gene regulatory networks analysis for time course DNA microarray data from C. elegans, preliminary results and findings","display_name":"Large-scale dynamic gene regulatory networks analysis for time course DNA microarray data from C. elegans, preliminary results and findings","publication_year":2015,"publication_date":"2015-07-01","ids":{"openalex":"https://openalex.org/W1603628816","doi":"https://doi.org/10.1109/icdsp.2015.7251934","mag":"1603628816"},"language":"en","primary_location":{"id":"doi:10.1109/icdsp.2015.7251934","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icdsp.2015.7251934","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Digital Signal Processing (DSP)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001603294","display_name":"L. Zhang","orcid":"https://orcid.org/0009-0009-5282-8022"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"L. Zhang","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong SAR, P. R. China","Department of Electrical and Electronic Engineering the University of Hong Kong Pokfulam Road, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong SAR, P. R. China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Electrical and Electronic Engineering the University of Hong Kong Pokfulam Road, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101830959","display_name":"H. C. Wu","orcid":"https://orcid.org/0000-0002-4555-3675"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"H. C. Wu","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong SAR, P. R. China","Department of Electrical and Electronic Engineering the University of Hong Kong Pokfulam Road, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong SAR, P. R. China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Electrical and Electronic Engineering the University of Hong Kong Pokfulam Road, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057049452","display_name":"S. C. Chan","orcid":"https://orcid.org/0000-0001-7212-4182"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"S. C. Chan","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong SAR, P. R. China","Department of Electrical and Electronic Engineering the University of Hong Kong Pokfulam Road, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong SAR, P. R. China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Electrical and Electronic Engineering the University of Hong Kong Pokfulam Road, China","institution_ids":["https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I889458895"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04407963,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"408","issue":null,"first_page":"552","last_page":"556"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5183535814285278},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5040256381034851},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5016705989837646},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4780083894729614},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.4558386504650116},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.4137878119945526},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40823599696159363},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.35679394006729126},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35441693663597107},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24419543147087097},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2435131072998047},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12705156207084656}],"concepts":[{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5183535814285278},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5040256381034851},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5016705989837646},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4780083894729614},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.4558386504650116},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.4137878119945526},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40823599696159363},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.35679394006729126},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35441693663597107},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24419543147087097},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2435131072998047},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12705156207084656},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icdsp.2015.7251934","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icdsp.2015.7251934","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE International Conference on Digital Signal Processing (DSP)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1895023662","https://openalex.org/W1968971029","https://openalex.org/W1977180164","https://openalex.org/W1996625457","https://openalex.org/W1998359653","https://openalex.org/W2032909213","https://openalex.org/W2038492783","https://openalex.org/W2041835091","https://openalex.org/W2055181592","https://openalex.org/W2059032920","https://openalex.org/W2061280979","https://openalex.org/W2062029454","https://openalex.org/W2063325205","https://openalex.org/W2076372398","https://openalex.org/W2090128190","https://openalex.org/W2090347885","https://openalex.org/W2098350013","https://openalex.org/W2100864855","https://openalex.org/W2109944603","https://openalex.org/W2122288804","https://openalex.org/W2125471204","https://openalex.org/W2128491398","https://openalex.org/W2134366512","https://openalex.org/W2142058898","https://openalex.org/W2142460132","https://openalex.org/W2142871680","https://openalex.org/W2144953011","https://openalex.org/W2148799578","https://openalex.org/W2163480486","https://openalex.org/W2164278908","https://openalex.org/W4292363360","https://openalex.org/W6666075070","https://openalex.org/W6669562258"],"related_works":["https://openalex.org/W4296209631","https://openalex.org/W4388311650","https://openalex.org/W5922282","https://openalex.org/W1974056099","https://openalex.org/W4245343541","https://openalex.org/W2386077341","https://openalex.org/W563589758","https://openalex.org/W3097449145","https://openalex.org/W62490179","https://openalex.org/W1982897783"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"preliminary":[3],"results":[4],"and":[5,31,39,63,73,116,127,165],"findings":[6],"of":[7,41,51,70,88,106,141],"a":[8,26,28,95,153],"dynamic":[9],"gene":[10,162],"regulatory":[11],"networks":[12],"analysis":[13,160],"obtained":[14],"from":[15],"Caenorhabditis":[16],"elegans":[17],"(C.":[18],"elegans)":[19],"time":[20,43],"course":[21,44],"DNA":[22],"microarray":[23,45,163],"data":[24,46,164],"using":[25,161],"maximum":[27],"posteriori":[29],"probability":[30],"time-varying":[32,52,158],"autoregression":[33],"model":[34],"(MAP-TVAR)":[35],"approach.":[36,124],"High":[37],"dimensionality":[38],"non-stationarity":[40],"the":[42,59,68,75,90,100,104,114,122,137,147],"are":[47,131],"two":[48],"major":[49],"challenges":[50],"GRNs":[53,72,159],"analysis.":[54],"The":[55],"proposed":[56],"method":[57],"employs":[58],"L1-regularization":[60],"based":[61,98],"sparsity":[62],"continuity":[64],"constraints,":[65],"which":[66,82],"facilitate":[67],"identification":[69],"sparse":[71],"reduce":[74],"estimation":[76],"variance":[77],"respectively.":[78],"To":[79],"process":[80,140],"dataset":[81],"may":[83,150],"contain":[84],"extremely":[85],"large":[86],"amount":[87],"genes,":[89],"MAP-TVAR":[91,123,148],"is":[92],"extended":[93],"to":[94,103,133],"distributed":[96],"framework":[97],"on":[99],"concept":[101],"similar":[102],"spirit":[105],"Split":[107],"Bregman":[108],"method.":[109],"Well-known":[110],"interactions":[111,126],"such":[112],"as":[113,152],"eEF-1A.1":[115],"RPL-12,":[117],"can":[118],"be":[119,134],"identified":[120],"by":[121],"These":[125,144],"their":[128],"corresponding":[129],"genes":[130],"found":[132],"related":[135,167],"in":[136],"embryo":[138],"development":[139],"C.":[142],"elegans.":[143],"suggest":[145],"that":[146],"approach":[149],"serve":[151],"wonderful":[154],"tool":[155],"for":[156],"large-scale":[157],"other":[166],"datasets.":[168]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
