{"id":"https://openalex.org/W1982697243","doi":"https://doi.org/10.1109/icdsp.2014.6900761","title":"Reconstruction of gene regulatory networks from short time series high throughput data: Review and new findings","display_name":"Reconstruction of gene regulatory networks from short time series high throughput data: Review and new findings","publication_year":2014,"publication_date":"2014-08-01","ids":{"openalex":"https://openalex.org/W1982697243","doi":"https://doi.org/10.1109/icdsp.2014.6900761","mag":"1982697243"},"language":"en","primary_location":{"id":"doi:10.1109/icdsp.2014.6900761","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icdsp.2014.6900761","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 19th International Conference on Digital Signal Processing","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101830959","display_name":"H. C. Wu","orcid":"https://orcid.org/0000-0002-4555-3675"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"H. C. Wu","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, SAR China","Department of Electrical and Electronic Engineering the University of Hong Kong Hong Kong SAR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, SAR China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Electrical and Electronic Engineering the University of Hong Kong Hong Kong SAR China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001603294","display_name":"L. Zhang","orcid":"https://orcid.org/0009-0009-5282-8022"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"L. Zhang","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, SAR China","Department of Electrical and Electronic Engineering the University of Hong Kong Hong Kong SAR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, SAR China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Electrical and Electronic Engineering the University of Hong Kong Hong Kong SAR China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057049452","display_name":"S. C. Chan","orcid":"https://orcid.org/0000-0001-7212-4182"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"S. C. Chan","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, SAR China","Department of Electrical and Electronic Engineering the University of Hong Kong Hong Kong SAR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, The University of Hong Kong, Hong Kong, SAR China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Electrical and Electronic Engineering the University of Hong Kong Hong Kong SAR China","institution_ids":["https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I889458895"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.0848163,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"4","issue":null,"first_page":"733","last_page":"738"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6418245434761047},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.632231593132019},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.5973681807518005},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5842489004135132},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5005998611450195},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4754749834537506},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38550660014152527},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37561410665512085},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3501407504081726},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33092185854911804},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29781466722488403},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.20497620105743408},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15897691249847412},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.08969730138778687}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6418245434761047},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.632231593132019},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.5973681807518005},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5842489004135132},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5005998611450195},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4754749834537506},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38550660014152527},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37561410665512085},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3501407504081726},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33092185854911804},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29781466722488403},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.20497620105743408},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15897691249847412},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.08969730138778687},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icdsp.2014.6900761","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icdsp.2014.6900761","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 19th International Conference on Digital Signal Processing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5099999904632568,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W59516454","https://openalex.org/W1534340623","https://openalex.org/W1963522244","https://openalex.org/W1966250206","https://openalex.org/W1969549583","https://openalex.org/W1976169036","https://openalex.org/W1984838629","https://openalex.org/W1989652873","https://openalex.org/W1990028112","https://openalex.org/W2007471837","https://openalex.org/W2020533597","https://openalex.org/W2032909213","https://openalex.org/W2057000049","https://openalex.org/W2059019820","https://openalex.org/W2073810398","https://openalex.org/W2076372398","https://openalex.org/W2106927126","https://openalex.org/W2111619115","https://openalex.org/W2118640031","https://openalex.org/W2119862467","https://openalex.org/W2142460132","https://openalex.org/W2146230717","https://openalex.org/W2146678343","https://openalex.org/W2151038079","https://openalex.org/W2158137698","https://openalex.org/W2160496385","https://openalex.org/W2161922735","https://openalex.org/W4253875976"],"related_works":["https://openalex.org/W4296209631","https://openalex.org/W2561617217","https://openalex.org/W4294811468","https://openalex.org/W2355801475","https://openalex.org/W2136583354","https://openalex.org/W2170062176","https://openalex.org/W2111238207","https://openalex.org/W4206659427","https://openalex.org/W2148135840","https://openalex.org/W106004901"],"abstract_inverted_index":{"The":[0,36],"reconstruction":[1,144],"of":[2,12,38,42,56,86,91,96,116,129],"gene":[3,34,70,110],"regulatory":[4],"networks":[5,71],"(GRNs)":[6],"helps":[7],"to":[8,31,46,104,113],"improve":[9],"the":[10,54,69,78,94,97,109,114,123,127,139],"understanding":[11],"underlying":[13],"molecular":[14],"mechanisms.":[15],"Many":[16],"important":[17],"biological":[18],"phenomena,":[19],"such":[20],"as":[21],"genetic":[22],"events":[23],"involved":[24],"in":[25,100,107,142],"cancer":[26,63],"proliferation,":[27],"have":[28],"been":[29],"attributed":[30],"these":[32,39],"correlated":[33],"expressions.":[35],"identification":[37],"interactions,":[40],"some":[41],"which":[43],"carry":[44],"signatures":[45],"clinical":[47,58],"relevant":[48],"physiological":[49],"effects,":[50],"sheds":[51],"light":[52],"on":[53,121],"development":[55],"various":[57],"applications.":[59],"For":[60],"example,":[61],"breast":[62],"metastasis":[64],"can":[65],"be":[66],"inferred":[67],"from":[68,73,145],"reconstructed":[72],"high":[74,149],"throughput":[75,150],"data.":[76,151],"However,":[77],"DNA":[79],"microarray":[80],"data":[81],"usually":[82],"contain":[83],"large":[84],"number":[85,90],"genes":[87],"but":[88],"small":[89],"samples,":[92],"thus":[93],"incorporation":[95],"extra":[98],"dimension":[99],"time":[101,147],"may":[102],"lead":[103],"further":[105],"complications":[106],"capturing":[108],"regulations":[111],"due":[112],"curse":[115],"dimensionality.":[117],"This":[118],"review":[119],"focuses":[120],"introducing":[122],"signal":[124],"processing":[125],"community":[126],"concept":[128],"GRN":[130,143],"reconstruction.":[131],"In":[132],"particular,":[133],"we":[134],"highlight":[135],"state-of-the-art":[136],"methodologies":[137],"and":[138],"latest":[140],"challenges":[141],"short":[146],"course":[148]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
