{"id":"https://openalex.org/W2037219822","doi":"https://doi.org/10.1109/icdse.2014.6974623","title":"CancerEpiDB: A database for DNA methylated genes in cancer","display_name":"CancerEpiDB: A database for DNA methylated genes in cancer","publication_year":2014,"publication_date":"2014-08-01","ids":{"openalex":"https://openalex.org/W2037219822","doi":"https://doi.org/10.1109/icdse.2014.6974623","mag":"2037219822"},"language":"en","primary_location":{"id":"doi:10.1109/icdse.2014.6974623","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icdse.2014.6974623","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 International Conference on Data Science &amp; Engineering (ICDSE)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061266467","display_name":"Akshay Desai","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Akshay Desai","raw_affiliation_strings":["School of Informatics and Computing, IUPUI, Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, IUPUI, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029457488","display_name":"Meeta Pradhan","orcid":"https://orcid.org/0000-0003-4450-1897"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meeta Pradhan","raw_affiliation_strings":["School of Informatics and Computing, IUPUI, Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, IUPUI, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044460012","display_name":"Mathew Palakal","orcid":"https://orcid.org/0000-0002-2990-0999"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mathew Palakal","raw_affiliation_strings":["School of Informatics and Computing, IUPUI, Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, IUPUI, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013136525","display_name":"Premkumar Duraiswamy","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Premkumar Duraiswamy","raw_affiliation_strings":["Department of Computer Science, IUPUI, Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, IUPUI, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I55769427"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"36","issue":null,"first_page":"124","last_page":"129"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.7857577800750732},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6818852424621582},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6633689403533936},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5481805801391602},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.5386417508125305},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.5385343432426453},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4658791422843933},{"id":"https://openalex.org/keywords/epigenomics","display_name":"Epigenomics","score":0.45306146144866943},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4353153705596924},{"id":"https://openalex.org/keywords/differentially-methylated-regions","display_name":"Differentially methylated regions","score":0.43214038014411926},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.42744526267051697},{"id":"https://openalex.org/keywords/methylated-dna-immunoprecipitation","display_name":"Methylated DNA immunoprecipitation","score":0.4271332621574402},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37627169489860535},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11707198619842529}],"concepts":[{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.7857577800750732},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6818852424621582},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6633689403533936},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5481805801391602},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.5386417508125305},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.5385343432426453},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4658791422843933},{"id":"https://openalex.org/C121912465","wikidata":"https://www.wikidata.org/wiki/Q3589153","display_name":"Epigenomics","level":5,"score":0.45306146144866943},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4353153705596924},{"id":"https://openalex.org/C154253233","wikidata":"https://www.wikidata.org/wiki/Q14862240","display_name":"Differentially methylated regions","level":5,"score":0.43214038014411926},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.42744526267051697},{"id":"https://openalex.org/C116114238","wikidata":"https://www.wikidata.org/wiki/Q6823960","display_name":"Methylated DNA immunoprecipitation","level":5,"score":0.4271332621574402},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37627169489860535},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11707198619842529},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icdse.2014.6974623","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icdse.2014.6974623","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 International Conference on Data Science &amp; Engineering (ICDSE)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.7200000286102295}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1965262464","https://openalex.org/W1974342535","https://openalex.org/W1986849266","https://openalex.org/W1991281695","https://openalex.org/W1995945562","https://openalex.org/W2029197798","https://openalex.org/W2042545888","https://openalex.org/W2046342816","https://openalex.org/W2054823635","https://openalex.org/W2056040742","https://openalex.org/W2090127207","https://openalex.org/W2102433947","https://openalex.org/W2105381419","https://openalex.org/W2120453034","https://openalex.org/W2120817191","https://openalex.org/W2127640118","https://openalex.org/W2132601639","https://openalex.org/W2136492640","https://openalex.org/W2139031446","https://openalex.org/W2142237411","https://openalex.org/W2142257318","https://openalex.org/W2163485494","https://openalex.org/W2164575981","https://openalex.org/W2165674132","https://openalex.org/W2165685453","https://openalex.org/W2171278685","https://openalex.org/W2325343629","https://openalex.org/W2604823638","https://openalex.org/W4251634403","https://openalex.org/W4298018660","https://openalex.org/W6649611171","https://openalex.org/W6723941685"],"related_works":["https://openalex.org/W2551449604","https://openalex.org/W2155605783","https://openalex.org/W2150806204","https://openalex.org/W2169344098","https://openalex.org/W4238340698","https://openalex.org/W2150651400","https://openalex.org/W2033244804","https://openalex.org/W4233664389","https://openalex.org/W1480390089","https://openalex.org/W2127540087"],"abstract_inverted_index":{"Epigenetic":[0],"refers":[1],"to":[2,14,242],"the":[3,8,17,27,46,53,66,84,94,104,122,137,164,181,186,192,195,201,223],"reversible":[4],"functional":[5],"modifications":[6,21],"of":[7,41,83,129,136,144,153,194,213,247],"genome":[9],"that":[10,218],"do":[11],"not":[12],"correlate":[13],"changes":[15,25],"in":[16,26,38,64,97,126,250],"DNA":[18,30,35,70,87,106,123,146,154,165,187,196],"sequence.":[19],"These":[20],"are":[22,73,86],"caused":[23],"by":[24,56,222,229],"chro-matin":[28],"structure,":[29],"methylation":[31,36],"and":[32,39,44,78,103,127,159,176,204,215,235],"histone":[33],"modification.":[34],"occurs":[37],"out":[40,128],"CpG":[42,130],"islands,":[43],"affects":[45],"transcription":[47],"factors":[48,183],"(TFs).":[49],"The":[50,69,134,225],"TFs":[51],"affect":[52],"downstream":[54],"genes":[55,72,108,125,148,156,167,189,206,249],"activating":[57],"or":[58],"silencing":[59],"them.":[60],"This":[61,89],"is":[62,91,139,227,253],"observed":[63],"all":[65],"complex":[67],"diseases.":[68],"methylated":[71,80,107,124,147,155,161,166,188,197],"further":[74],"classified":[75],"as":[76,157],"hyper":[77,158],"hypo":[79,160],"genes.":[81],"Most":[82],"oncogenes":[85],"methylated.":[88],"database":[90,116,138,226],"developed":[92],"using":[93,112],"available":[95,254],"data":[96],"THE":[98],"CANCER":[99],"GENOME":[100],"ATLAS":[101],"(TCGA)":[102],"significant":[105],"identified":[109],"were":[110],"validated":[111,221],"literature.":[113],"For":[114],"this":[115,209],"a":[117,244],"comprehensive":[118,245],"methodology":[119],"based":[120,199],"on":[121,200],"islands":[131],"was":[132],"developed.":[133],"objective":[135],"fivefold":[140],"-":[141],"(i)":[142],"Identification":[143],"stage-specific":[145],"across":[149],"cancers":[150],"(ii)":[151],"Classification":[152],"(iii)":[162],"Annotating":[163],"with":[168,185],"their":[169],"biological":[170],"properties":[171],"like":[172],"Gene":[173],"Ontology,":[174],"Pathway,":[175],"Disease":[177],"association":[178],"(iv)":[179],"Identifying":[180,191],"environmental":[182],"associated":[184],"(v)":[190],"interactome":[193],"gene":[198],"BioGRID":[202],"interaction":[203],"expressed":[205],"from":[207],"TCGA,":[208],"gives":[210],"an":[211,239],"overview":[212],"existing":[214],"new":[216],"interactions":[217],"can":[219],"be":[220],"researcher.":[224],"complemented":[228],"Web":[230],"interface":[231],"for":[232],"searching,":[233],"browsing":[234],"interactions.":[236],"CancerEpiDB":[237,252],"provides":[238],"initial":[240],"attempt":[241],"create":[243],"resource":[246],"epigenetic":[248],"cancer.":[251],"at":[255],"(http://regen.informatics.iupui.edu/cgi-bin/epigenetics/DEVenv/index.php).":[256]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
