{"id":"https://openalex.org/W2131780143","doi":"https://doi.org/10.1109/icde.2011.5767938","title":"Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler","display_name":"Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler","publication_year":2011,"publication_date":"2011-04-01","ids":{"openalex":"https://openalex.org/W2131780143","doi":"https://doi.org/10.1109/icde.2011.5767938","mag":"2131780143"},"language":"en","primary_location":{"id":"doi:10.1109/icde.2011.5767938","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2011.5767938","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE 27th International Conference on Data Engineering","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100668338","display_name":"Lei Dou","orcid":"https://orcid.org/0000-0002-8889-6862"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lei Dou","raw_affiliation_strings":["UC Davis Genome Center, University of California, Davis, CA, USA","UC Davis Genome Center, University of California, Davis, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109361075","display_name":"Daniel Zinn","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Zinn","raw_affiliation_strings":["UC Davis Genome Center, University of California, Davis, CA, USA","UC Davis Genome Center, University of California, Davis, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112454332","display_name":"Timothy McPhillips","orcid":"https://orcid.org/0000-0002-8238-2449"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy McPhillips","raw_affiliation_strings":["UC Davis Genome Center, University of California, Davis, CA, USA","UC Davis Genome Center, University of California, Davis, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101634110","display_name":"Sven K\u00f6hler","orcid":"https://orcid.org/0000-0002-6068-135X"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sven Kohler","raw_affiliation_strings":["UC Davis Genome Center, University of California, Davis, CA, USA","UC Davis Genome Center, University of California, Davis, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050383033","display_name":"Sean Riddle","orcid":null},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Riddle","raw_affiliation_strings":["UC Davis Genome Center, University of California, Davis, CA, USA","UC Davis Genome Center, University of California, Davis, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014091778","display_name":"Shawn Bowers","orcid":"https://orcid.org/0000-0002-2972-0197"},"institutions":[{"id":"https://openalex.org/I119888943","display_name":"Gonzaga University","ror":"https://ror.org/03ze70h02","country_code":"US","type":"education","lineage":["https://openalex.org/I119888943"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shawn Bowers","raw_affiliation_strings":["Department of Computer Science, Gonzaga University, Spokane, WA, USA","[Department of Computer Science, Gonzaga University, Spokane, WA 99258 USA.]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Gonzaga University, Spokane, WA, USA","institution_ids":["https://openalex.org/I119888943"]},{"raw_affiliation_string":"[Department of Computer Science, Gonzaga University, Spokane, WA 99258 USA.]","institution_ids":["https://openalex.org/I119888943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057600294","display_name":"Bertram Lud\u00e4scher","orcid":"https://orcid.org/0000-0001-9140-936X"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bertram Ludascher","raw_affiliation_strings":["UC Davis Genome Center, University of California, Davis, CA, USA","UC Davis Genome Center, University of California, Davis, 95616, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"UC Davis Genome Center, University of California, Davis, 95616, USA","institution_ids":["https://openalex.org/I84218800"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1296","last_page":"1299"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8706835508346558},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8210458159446716},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.7497416138648987},{"id":"https://openalex.org/keywords/workflow-engine","display_name":"Workflow engine","score":0.6513333916664124},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.5550447702407837},{"id":"https://openalex.org/keywords/windows-workflow-foundation","display_name":"Windows Workflow Foundation","score":0.4794548749923706},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4352005124092102},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.432394802570343},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3266157805919647}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8706835508346558},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8210458159446716},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.7497416138648987},{"id":"https://openalex.org/C188220564","wikidata":"https://www.wikidata.org/wiki/Q3325097","display_name":"Workflow engine","level":3,"score":0.6513333916664124},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.5550447702407837},{"id":"https://openalex.org/C163888707","wikidata":"https://www.wikidata.org/wiki/Q1154450","display_name":"Windows Workflow Foundation","level":4,"score":0.4794548749923706},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4352005124092102},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.432394802570343},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3266157805919647}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icde.2011.5767938","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2011.5767938","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE 27th International Conference on Data Engineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1983833794","https://openalex.org/W1996599304","https://openalex.org/W2024808072","https://openalex.org/W2072303404","https://openalex.org/W2075043513","https://openalex.org/W2090166250","https://openalex.org/W2109546901","https://openalex.org/W2129666400","https://openalex.org/W2145154883","https://openalex.org/W2154055222","https://openalex.org/W2168103533"],"related_works":["https://openalex.org/W2049143847","https://openalex.org/W2352774566","https://openalex.org/W2370201914","https://openalex.org/W2356466503","https://openalex.org/W2373656887","https://openalex.org/W2354357087","https://openalex.org/W2376671203","https://openalex.org/W2385499106","https://openalex.org/W2387628393","https://openalex.org/W4243394944"],"abstract_inverted_index":{"Scientific":[0],"workflow":[1,43,83,148],"systems":[2],"are":[3],"used":[4],"to":[5,15,35,52,137,146,164],"integrate":[6],"existing":[7],"software":[8],"components":[9],"(actors)":[10],"into":[11],"larger":[12],"analysis":[13,188],"pipelines":[14],"perform":[16],"in":[17,25,30,66,98,155,218],"silico":[18],"experiments.":[19],"Current":[20],"approaches":[21],"for":[22,106],"handling":[23],"data":[24,94,117,125,128,179,187],"nested-collection":[26],"structures,":[27],"as":[28,48,110,177],"required":[29],"many":[31,36],"scientific":[32,186],"domains,":[33],"lead":[34],"record-management":[37],"actors":[38,107],"(shims)":[39],"that":[40,108],"make":[41],"the":[42,67,115,123,140,147,185,209,213],"structure":[44,196],"overly":[45],"complex,":[46],"and":[47,55,59,64,77,100,122,129,168,202],"a":[49,92,101,111],"consequence":[50],"hard":[51],"construct,":[53],"evolve":[54],"maintain.":[56],"By":[57],"constructing":[58],"executing":[60],"workflows":[61,157,172],"from":[62],"bioinformatics":[63],"geosciences":[65],"Kepler":[68],"system,":[69],"we":[70],"will":[71],"demonstrate":[72],"how":[73],"COMAD":[74,90,171],"(Collection-Oriented":[75],"Modeling":[76],"Design),":[78],"an":[79],"extension":[80],"of":[81,212],"conventional":[82,192],"design,":[84],"addresses":[85],"these":[86],"shortcomings.":[87],"In":[88],"particular,":[89],"provides":[91],"hierarchical":[93],"stream":[95],"model":[96,118,126],"(as":[97],"XML)":[99],"novel":[102],"declarative":[103,169],"configuration":[104],"language":[105],"functions":[109],"middleware":[112],"layer":[113],"between":[114],"workflow's":[116],"(streaming":[119],"nested":[120,166],"collections)":[121],"actor's":[124],"(base":[127],"lists":[130],"thereof).":[131],"Our":[132],"approach":[133],"allows":[134],"actor":[135,142,161,200],"developers":[136],"focus":[138],"on":[139],"internal":[141],"processing":[143,180],"logic":[144],"oblivious":[145],"structure.":[149],"Actors":[150],"can":[151,173],"then":[152],"be":[153,175],"re-used":[154],"various":[156],"simply":[158],"by":[159],"adapting":[160],"configurations.":[162],"Due":[163],"streaming":[165],"collections":[167],"configurations,":[170],"usually":[174],"realized":[176],"linear":[178,195],"pipelines,":[181],"which":[182],"often":[183],"reflect":[184],"intention":[189],"better":[190],"than":[191],"designs.":[193],"This":[194],"not":[197],"only":[198],"simplifies":[199],"insertions":[201],"deletions":[203],"(workflow":[204],"evolution),":[205],"but":[206],"also":[207],"decreases":[208],"overall":[210],"complexity":[211],"workflow,":[214],"reducing":[215],"future":[216],"effort":[217],"maintenance.":[219]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
