{"id":"https://openalex.org/W1992049046","doi":"https://doi.org/10.1109/icde.2008.4497632","title":"Mining Gene Expression Database for Primary Human Disease Tissues","display_name":"Mining Gene Expression Database for Primary Human Disease Tissues","publication_year":2008,"publication_date":"2008-04-01","ids":{"openalex":"https://openalex.org/W1992049046","doi":"https://doi.org/10.1109/icde.2008.4497632","mag":"1992049046"},"language":"en","primary_location":{"id":"doi:10.1109/icde.2008.4497632","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2008.4497632","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE 24th International Conference on Data Engineering","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050516278","display_name":"Andrew Campen","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Campen","raw_affiliation_strings":["Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","Dept. of Comput. Sci., Indiana Univ., Indianapolis, IN"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Indiana Univ., Indianapolis, IN","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050333023","display_name":"Yuni Xia","orcid":"https://orcid.org/0000-0002-9569-1355"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuni Xia","raw_affiliation_strings":["Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","Department of Computer Science, Indiana University Purdue University - Indianapolis, Indianapolis, Indiana, USA. yxia@cs.iupui.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Computer Science, Indiana University Purdue University - Indianapolis, Indianapolis, Indiana, USA. yxia@cs.iupui.edu","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027538735","display_name":"Dan Rigsby","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dan Rigsby","raw_affiliation_strings":["Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","Department of Computer Science, Indiana University Purdue University - Indianapolis, Indianapolis, Indiana, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Computer Science, Indiana University Purdue University - Indianapolis, Indianapolis, Indiana, USA#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043560507","display_name":"Ying Guo","orcid":"https://orcid.org/0000-0002-3715-4287"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Guo","raw_affiliation_strings":["Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","Department of Computer Science, Indiana University Purdue University - Indianapolis, Indianapolis, Indiana, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Computer Science, Indiana University Purdue University - Indianapolis, Indianapolis, Indiana, USA#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101698092","display_name":"Xingdong Feng","orcid":"https://orcid.org/0000-0002-6091-8169"},"institutions":[{"id":"https://openalex.org/I168537998","display_name":"Eli Lilly (United States)","ror":"https://ror.org/01qat3289","country_code":"US","type":"company","lineage":["https://openalex.org/I168537998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xingdong Feng","raw_affiliation_strings":["Integrative Biology, Eli Lilly and Company, Indianapolis, IN, USA","Integrative Biology, Eli Lilly and Company, Indianapolis, Indiana, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrative Biology, Eli Lilly and Company, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I168537998"]},{"raw_affiliation_string":"Integrative Biology, Eli Lilly and Company, Indianapolis, Indiana, USA","institution_ids":["https://openalex.org/I168537998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005430264","display_name":"Eric Wen Su","orcid":null},"institutions":[{"id":"https://openalex.org/I168537998","display_name":"Eli Lilly (United States)","ror":"https://ror.org/01qat3289","country_code":"US","type":"company","lineage":["https://openalex.org/I168537998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric W. Su","raw_affiliation_strings":["Integrative Biology, Eli Lilly and Company, Indianapolis, IN, USA","Integrative Biology, Eli Lilly and Company, Indianapolis, Indiana, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrative Biology, Eli Lilly and Company, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I168537998"]},{"raw_affiliation_string":"Integrative Biology, Eli Lilly and Company, Indianapolis, Indiana, USA","institution_ids":["https://openalex.org/I168537998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044460012","display_name":"Mathew Palakal","orcid":"https://orcid.org/0000-0002-2990-0999"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mathew Palakal","raw_affiliation_strings":["Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","Department of Computer Science, Indiana University Purdue University - Indianapolis, Indianapolis, Indiana, USA. mpalakal@iupui.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Department of Computer Science, Indiana University Purdue University - Indianapolis, Indianapolis, Indiana, USA. mpalakal@iupui.edu","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100733002","display_name":"Shuyu Li","orcid":"https://orcid.org/0000-0002-3402-4903"},"institutions":[{"id":"https://openalex.org/I168537998","display_name":"Eli Lilly (United States)","ror":"https://ror.org/01qat3289","country_code":"US","type":"company","lineage":["https://openalex.org/I168537998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuyu Li","raw_affiliation_strings":["Integrative Biology, Eli Lilly and Company, Indianapolis, IN, USA","Integrative Biology, Eli Lilly and Company, Indianapolis, Indiana, USA. LI_SHUYU_DAN@lilly.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrative Biology, Eli Lilly and Company, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I168537998"]},{"raw_affiliation_string":"Integrative Biology, Eli Lilly and Company, Indianapolis, Indiana, USA. LI_SHUYU_DAN@lilly.com","institution_ids":["https://openalex.org/I168537998"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1604","last_page":"1607"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5673882365226746},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5160669684410095},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4946610629558563},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44771403074264526},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.44135862588882446},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.43850409984588623},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.43454426527023315},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.42652595043182373},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4211302697658539},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.42095500230789185},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4100106954574585},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.38823381066322327},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3397461175918579},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33968600630760193},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3198089301586151},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2445085048675537},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.17682382464408875},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1460389494895935}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5673882365226746},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5160669684410095},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4946610629558563},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44771403074264526},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.44135862588882446},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.43850409984588623},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.43454426527023315},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.42652595043182373},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4211302697658539},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.42095500230789185},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4100106954574585},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38823381066322327},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3397461175918579},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33968600630760193},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3198089301586151},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2445085048675537},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.17682382464408875},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1460389494895935},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icde.2008.4497632","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2008.4497632","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE 24th International Conference on Data Engineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W1979300931","https://openalex.org/W2137960802","https://openalex.org/W4293241248"],"related_works":["https://openalex.org/W2052655934","https://openalex.org/W104645380","https://openalex.org/W2027213253","https://openalex.org/W2023641020","https://openalex.org/W2017047508","https://openalex.org/W2165201120","https://openalex.org/W2188530857","https://openalex.org/W2041199873","https://openalex.org/W1971081588","https://openalex.org/W1964194222"],"abstract_inverted_index":{"Studies":[0],"of":[1,36,72,116,122,140],"gene":[2,132],"expression":[3,57,101],"in":[4,13,88,92,137,144],"primary":[5,74],"human":[6,73],"disease":[7,75,89],"tissue":[8,90],"often":[9],"span":[10],"several":[11],"years":[12],"order":[14],"to":[15,22,33,84],"achieve":[16],"reasonably":[17],"large":[18],"sample":[19],"sizes":[20],"and":[21,48,65,149],"collect":[23],"patient":[24,110],"clinical":[25,106],"information":[26],"making":[27],"this":[28,40,117],"data":[29,41,66,71,118],"particularly":[30],"valuable.":[31],"Due":[32],"the":[34,120,138],"lack":[35],"a":[37,61,130],"central":[38],"repository,":[39],"has":[42,80],"only":[43],"been":[44,82],"available":[45],"through":[46],"disparate":[47],"non-publicly":[49],"accessible":[50,63],"sources":[51],"following":[52],"publication.":[53],"We":[54],"developed":[55],"disease-to-gene":[56],"mapper":[58],"(D-GEM)":[59],"as":[60,109],"publically":[62],"database":[64],"mining":[67],"toolbox":[68],"for":[69,134],"microarray":[70],"tissue.":[76],"A":[77],"statistical":[78],"pipeline":[79],"also":[81],"implemented":[83],"identify":[85],"genes":[86,99],"over-expressed":[87],"samples":[91],"comparison":[93],"with":[94,105],"normal":[95],"control":[96],"samples,":[97],"or":[98],"whose":[100],"values":[102],"are":[103],"associated":[104],"parameters":[107],"such":[108],"survival":[111],"rate.":[112],"One":[113],"potential":[114],"application":[115],"is":[119],"identification":[121],"pathway":[123],"specific":[124],"cancer":[125,135,145],"prognosis":[126,136],"markers.":[127],"By":[128],"applying":[129],"novel,":[131],"signatures":[133],"context":[139],"known":[141],"biological":[142],"pathways":[143],"development":[146],"were":[147],"identified":[148],"confirmed.":[150]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
