{"id":"https://openalex.org/W2134201815","doi":"https://doi.org/10.1109/icde.2008.4497631","title":"Managing Biological Data using bdbms","display_name":"Managing Biological Data using bdbms","publication_year":2008,"publication_date":"2008-04-01","ids":{"openalex":"https://openalex.org/W2134201815","doi":"https://doi.org/10.1109/icde.2008.4497631","mag":"2134201815"},"language":"en","primary_location":{"id":"doi:10.1109/icde.2008.4497631","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2008.4497631","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE 24th International Conference on Data Engineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074322354","display_name":"Mohamed Y. Eltabakh","orcid":"https://orcid.org/0000-0002-6344-8246"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohamed Y. Eltabakh","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN, USA","Department of Computer Science, Purdue University, West Lafayette IN#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette IN#TAB#","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026923999","display_name":"Mourad Ouzzani","orcid":"https://orcid.org/0000-0002-4035-3025"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mourad Ouzzani","raw_affiliation_strings":["Cyber Center, Purdue University, West Lafayette, IN, USA","Cyber Center, Purdue University, West Lafayette, IN, USA. mourad@cs.purdue.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cyber Center, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Cyber Center, Purdue University, West Lafayette, IN, USA. mourad@cs.purdue.edu","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000123743","display_name":"Walid G. Aref","orcid":"https://orcid.org/0000-0001-8169-7775"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Walid G. Aref","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN, USA","Dept. of Computer Science, Purdue University, West Lafayette, IN, USA. aref@cs.purdue.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Dept. of Computer Science, Purdue University, West Lafayette, IN, USA. aref@cs.purdue.edu","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089912733","display_name":"Ahmed K. Elmagarmid","orcid":"https://orcid.org/0000-0002-0044-458X"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ahmed K. Elmagarmid","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN, USA","Dept. of Computer Science, Purdue University, West Lafayette, IN, USA. ake@cs.purdue.edu#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Dept. of Computer Science, Purdue University, West Lafayette, IN, USA. ake@cs.purdue.edu#TAB#","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081930111","display_name":"Yasin Laura-Silva","orcid":null},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yasin Laura-Silva","raw_affiliation_strings":["Department of Computer Science, Purdue University, West Lafayette, IN, USA","Dept. of Computer Science, Purdue University, West Lafayette, IN, USA. ylaurasi@cs.purdue.edu#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Dept. of Computer Science, Purdue University, West Lafayette, IN, USA. ylaurasi@cs.purdue.edu#TAB#","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102000027","display_name":"Muhammad U. Arshad","orcid":"https://orcid.org/0000-0002-0498-6175"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Muhammad U. Arshad","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, USA","Dept. of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, USA. marshad@ecn.purdue.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Dept. of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, USA. marshad@ecn.purdue.edu","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044903153","display_name":"David E. Salt","orcid":"https://orcid.org/0000-0003-0283-0991"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Salt","raw_affiliation_strings":["Department of Horticulture & Landscape Architecture, Purdue University, West Lafayette, IN, USA","Dept. of Horticulture&Landscape Architecture, Purdue University, West Lafayette, IN, USA. dsalt@purdue.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture & Landscape Architecture, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Dept. of Horticulture&Landscape Architecture, Purdue University, West Lafayette, IN, USA. dsalt@purdue.edu","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091484513","display_name":"Ivan Baxter","orcid":"https://orcid.org/0000-0001-6680-1722"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ivan Baxter","raw_affiliation_strings":["Department of Horticulture & Landscape Architecture, Purdue University, West Lafayette, IN, USA","Dept. of Horticulture&Landscape Architecture, Purdue University, West Lafayette, IN, USA. ibaxter@purdue.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture & Landscape Architecture, Purdue University, West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Dept. of Horticulture&Landscape Architecture, Purdue University, West Lafayette, IN, USA. ibaxter@purdue.edu","institution_ids":["https://openalex.org/I219193219"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":6.7474,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.9631119,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"143","issue":null,"first_page":"1600","last_page":"1603"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7935062646865845},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6292123198509216},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.623619794845581},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5984739661216736},{"id":"https://openalex.org/keywords/database-model","display_name":"Database model","score":0.44261249899864197},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4361534118652344},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4323737323284149},{"id":"https://openalex.org/keywords/data-administration","display_name":"Data administration","score":0.42681053280830383},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42222219705581665},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4142121374607086},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.41094881296157837},{"id":"https://openalex.org/keywords/database-design","display_name":"Database design","score":0.3650251030921936},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.09239181876182556}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7935062646865845},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6292123198509216},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.623619794845581},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5984739661216736},{"id":"https://openalex.org/C5968703","wikidata":"https://www.wikidata.org/wiki/Q267136","display_name":"Database model","level":3,"score":0.44261249899864197},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4361534118652344},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4323737323284149},{"id":"https://openalex.org/C115842085","wikidata":"https://www.wikidata.org/wiki/Q4057846","display_name":"Data administration","level":4,"score":0.42681053280830383},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42222219705581665},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4142121374607086},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.41094881296157837},{"id":"https://openalex.org/C148840519","wikidata":"https://www.wikidata.org/wiki/Q1049878","display_name":"Database design","level":2,"score":0.3650251030921936},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.09239181876182556},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/icde.2008.4497631","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2008.4497631","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE 24th International Conference on Data Engineering","raw_type":"proceedings-article"},{"id":"pmh:oai:docs.lib.purdue.edu:ccpubs-1248","is_oa":false,"landing_page_url":"https://docs.lib.purdue.edu/ccpubs/253","pdf_url":null,"source":{"id":"https://openalex.org/S4377196310","display_name":"Purdue e-Pubs (Purdue University System)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801333002","host_organization_name":"Purdue University System","host_organization_lineage":["https://openalex.org/I2801333002"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cyber Center Publications","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.139.1643","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.139.1643","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.purdue.edu/homes/ake/pub/icdebdbms2008.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.88.8397","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.88.8397","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.purdue.edu/homes/meltabak/bdbms_demo.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1500864568","https://openalex.org/W1657092947","https://openalex.org/W2028266153","https://openalex.org/W2101465039","https://openalex.org/W2111465715","https://openalex.org/W2125399128","https://openalex.org/W2127279146","https://openalex.org/W2140764807","https://openalex.org/W6629810204","https://openalex.org/W6636980721","https://openalex.org/W6680690566"],"related_works":["https://openalex.org/W1546344245","https://openalex.org/W1945121096","https://openalex.org/W3150227232","https://openalex.org/W1989645082","https://openalex.org/W1502610062","https://openalex.org/W2018151471","https://openalex.org/W2134829868","https://openalex.org/W1588786827","https://openalex.org/W3201625142","https://openalex.org/W2215867560"],"abstract_inverted_index":{"We":[0,85],"demonstrate":[1,86],"bdbms,":[2],"an":[3],"extensible":[4],"database":[5,16,102],"engine":[6,40],"for":[7],"biological":[8,27],"databases,":[9,94],"bdbms":[10,43,88],"started":[11],"on":[12],"the":[13,23,39,105],"observation":[14],"that":[15,30],"technology":[17],"has":[18],"not":[19,36],"kept":[20],"pace":[21],"with":[22],"specific":[24],"requirements":[25],"of":[26,48,70],"databases":[28],"and":[29,57,64,72,77,96],"several":[31,47],"needed":[32],"key":[33],"functionalities":[34],"are":[35],"supported":[37],"at":[38,45],"level.":[41],"While":[42],"aims":[44],"supporting":[46],"these":[49],"functionalities,":[50],"this":[51],"demo":[52],"focuses":[53],"on:":[54],"(1)":[55],"Annotation":[56],"provenance":[58],"management":[59,109],"including":[60],"storage,":[61],"indexing,":[62],"querying,":[63],"propagation,":[65],"(2)":[66],"Local":[67],"dependency":[68],"tracking":[69],"dependencies":[71],"derivations":[73],"among":[74],"data":[75,83],"items,":[76],"(3)":[78],"Update":[79],"authorization":[80],"to":[81,91],"support":[82],"curation.":[84],"how":[87],"enables":[89],"biologists":[90],"manipulate":[92],"their":[93],"annotations,":[95],"derivation":[97],"information":[98,108],"in":[99],"a":[100,113],"unified":[101],"system":[103,110],"using":[104],"Purdue":[106],"ionomics":[107],"(PiiMS)":[111],"as":[112],"case":[114],"study.":[115]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
