{"id":"https://openalex.org/W2137023570","doi":"https://doi.org/10.1109/icde.2004.1320040","title":"Engineering a fast online persistent suffix tree construction","display_name":"Engineering a fast online persistent suffix tree construction","publication_year":2004,"publication_date":"2004-09-28","ids":{"openalex":"https://openalex.org/W2137023570","doi":"https://doi.org/10.1109/icde.2004.1320040","mag":"2137023570"},"language":"en","primary_location":{"id":"doi:10.1109/icde.2004.1320040","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2004.1320040","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 20th International Conference on Data Engineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085995102","display_name":"Srikanta Bedathur","orcid":"https://orcid.org/0000-0002-3949-2175"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"S.J. Bedathur","raw_affiliation_strings":["Database Systems Lab, SERC, Indian Institute of Science, Bangalore, India","Database Syst. Lab., Indian Inst. of Sci., Bangalore, India"],"affiliations":[{"raw_affiliation_string":"Database Systems Lab, SERC, Indian Institute of Science, Bangalore, India","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Database Syst. Lab., Indian Inst. of Sci., Bangalore, India","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034222207","display_name":"Jayant R. Haritsa","orcid":"https://orcid.org/0000-0002-1255-3847"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"J.R. Haritsa","raw_affiliation_strings":["Database Systems Lab, SERC, Indian Institute of Science, Bangalore, India","Database Syst. Lab., Indian Inst. of Sci., Bangalore, India"],"affiliations":[{"raw_affiliation_string":"Database Systems Lab, SERC, Indian Institute of Science, Bangalore, India","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Database Syst. Lab., Indian Inst. of Sci., Bangalore, India","institution_ids":["https://openalex.org/I59270414"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5085995102"],"corresponding_institution_ids":["https://openalex.org/I59270414"],"apc_list":null,"apc_paid":null,"fwci":5.0834,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.95292592,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"720","last_page":"731"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.8518561124801636},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.8214937448501587},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7819538712501526},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6699609756469727},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.6309090256690979},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5661691427230835},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.47138696908950806},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4651440382003784},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.46026331186294556},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.454850971698761},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.42059195041656494},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.34641218185424805},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13906309008598328},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11304235458374023},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11301922798156738},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.0807555615901947},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06506994366645813}],"concepts":[{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.8518561124801636},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.8214937448501587},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7819538712501526},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6699609756469727},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.6309090256690979},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5661691427230835},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.47138696908950806},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4651440382003784},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.46026331186294556},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.454850971698761},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.42059195041656494},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.34641218185424805},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13906309008598328},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11304235458374023},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11301922798156738},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0807555615901947},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06506994366645813},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/icde.2004.1320040","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2004.1320040","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 20th International Conference on Data Engineering","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.iisc.ac.in:4495","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196309","display_name":"NOT FOUND REPOSITORY (Indian Institute of Science Bangalore)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59270414","host_organization_name":"Indian Institute of Science Bangalore","host_organization_lineage":["https://openalex.org/I59270414"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.459.4858","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.459.4858","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://eprints.iisc.ernet.in/4495/1/Engineering.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.75.834","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.75.834","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dsl.serc.iisc.ernet.in/publications/conference/topq.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W109756832","https://openalex.org/W408533863","https://openalex.org/W938539187","https://openalex.org/W1481340331","https://openalex.org/W1501676606","https://openalex.org/W1520815598","https://openalex.org/W1540616176","https://openalex.org/W1597723816","https://openalex.org/W1990061958","https://openalex.org/W2029135821","https://openalex.org/W2030962049","https://openalex.org/W2054308357","https://openalex.org/W2059513841","https://openalex.org/W2100451901","https://openalex.org/W2107079154","https://openalex.org/W2121252285","https://openalex.org/W2134616089","https://openalex.org/W2144570882","https://openalex.org/W2159942118","https://openalex.org/W2163772659","https://openalex.org/W2500470525","https://openalex.org/W2533248932","https://openalex.org/W6604467028","https://openalex.org/W6628766091","https://openalex.org/W6632287593","https://openalex.org/W6681515304"],"related_works":["https://openalex.org/W96331545","https://openalex.org/W1517600056","https://openalex.org/W1575722140","https://openalex.org/W1548907175","https://openalex.org/W2160738675","https://openalex.org/W2036633468","https://openalex.org/W3022556214","https://openalex.org/W4293529780","https://openalex.org/W193772702","https://openalex.org/W2003608043"],"abstract_inverted_index":{"Online":[0],"persistent":[1,132],"suffix":[2,38,89,106,133],"tree":[3,39,90,107,134],"construction":[4,44,91,135],"has":[5],"been":[6],"considered":[7],"impractical":[8],"due":[9],"to":[10,115],"its":[11],"excessive":[12],"I/O":[13,41],"costs.":[14],"However,":[15],"these":[16,53],"prior":[17],"studies":[18],"have":[19],"not":[20],"taken":[21],"into":[22],"account":[23],"the":[24,27,32,37,49,59,72,85,100,116],"effects":[25],"of":[26,36,43,61,88,105,126,142,144],"buffer":[28],"management":[29],"policy":[30,80],"and":[31,45,65,92,95],"internal":[33],"node":[34],"structure":[35],"on":[40],"behavior":[42,87],"subsequent":[46,93],"retrievals":[47],"over":[48],"tree.":[50],"We":[51],"study":[52],"two":[54],"issues":[55],"in":[56,58,140],"detail":[57],"context":[60],"large":[62],"genomic":[63],"DNA":[64],"protein":[66],"sequences.":[67],"In":[68],"particular,":[69],"we":[70],"make":[71,130],"following":[73],"contributions:":[74],"(i)":[75],"a":[76,123,148],"novel,":[77],"low-overhead":[78],"buffering":[79],"called":[81],"TOP-Q":[82],"which":[83],"improves":[84],"on-disk":[86],"retrievals,":[94],"(ii)":[96],"empirical":[97],"evidence":[98],"that":[99,122],"space":[101],"efficient":[102],"linked-list":[103],"representation":[104],"nodes":[108],"provides":[109],"significantly":[110],"inferior":[111],"performance":[112],"when":[113],"compared":[114],"array":[117],"representation.":[118],"These":[119],"results":[120],"demonstrate":[121],"careful":[124],"choice":[125],"implementation":[127],"strategies":[128],"can":[129],"online":[131],"considerably":[136],"more":[137],"scalable":[138],"-":[139],"terms":[141],"length":[143],"sequences":[145],"indexed":[146],"with":[147],"fixed":[149],"memory":[150],"budget,":[151],"than":[152],"currently":[153],"perceived.":[154]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
