{"id":"https://openalex.org/W2098759130","doi":"https://doi.org/10.1109/icde.2004.1320008","title":"SPINE: putting backbone into string indexing","display_name":"SPINE: putting backbone into string indexing","publication_year":2004,"publication_date":"2004-09-28","ids":{"openalex":"https://openalex.org/W2098759130","doi":"https://doi.org/10.1109/icde.2004.1320008","mag":"2098759130"},"language":"en","primary_location":{"id":"doi:10.1109/icde.2004.1320008","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2004.1320008","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 20th International Conference on Data Engineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023283820","display_name":"Naresh Neelapala","orcid":null},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Naresh Neelapala","raw_affiliation_strings":["Department of Computer Science and Automation, Indian Institute of Science, Bangalore, India","Dept of Computer Science & Automation, Indian Institute of Science, Bangalore, India#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Automation, Indian Institute of Science, Bangalore, India","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Dept of Computer Science & Automation, Indian Institute of Science, Bangalore, India#TAB#","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055300003","display_name":"Romil Mittal","orcid":null},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Romil Mittal","raw_affiliation_strings":["Department of Computer Science and Automation, Indian Institute of Science, Bangalore, India","Dept of Computer Science & Automation, Indian Institute of Science, Bangalore, India#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Automation, Indian Institute of Science, Bangalore, India","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Dept of Computer Science & Automation, Indian Institute of Science, Bangalore, India#TAB#","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034222207","display_name":"Jayant R. Haritsa","orcid":"https://orcid.org/0000-0002-1255-3847"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"J.R. Haritsa","raw_affiliation_strings":["Department of Computer Science and Automation, Indian Institute of Science, Bangalore, India","Dept of Computer Science & Automation, Indian Institute of Science, Bangalore, India#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Automation, Indian Institute of Science, Bangalore, India","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Dept of Computer Science & Automation, Indian Institute of Science, Bangalore, India#TAB#","institution_ids":["https://openalex.org/I59270414"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5023283820"],"corresponding_institution_ids":["https://openalex.org/I59270414"],"apc_list":null,"apc_paid":null,"fwci":0.9243,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.81776743,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"325","last_page":"336"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trie","display_name":"Trie","score":0.8908633589744568},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.8399162292480469},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6904141306877136},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6897311210632324},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.5435488224029541},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4947321116924286},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4809631407260895},{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.47602254152297974},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.47182875871658325},{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.45141884684562683},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.4435757100582123},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.4365870952606201},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.4254502058029175},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3762049674987793},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37201759219169617},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.26849597692489624},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2580520212650299},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.19211331009864807}],"concepts":[{"id":"https://openalex.org/C190290938","wikidata":"https://www.wikidata.org/wiki/Q387015","display_name":"Trie","level":3,"score":0.8908633589744568},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.8399162292480469},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6904141306877136},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6897311210632324},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.5435488224029541},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4947321116924286},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4809631407260895},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.47602254152297974},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.47182875871658325},{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.45141884684562683},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.4435757100582123},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.4365870952606201},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.4254502058029175},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3762049674987793},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37201759219169617},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.26849597692489624},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2580520212650299},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.19211331009864807},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/icde.2004.1320008","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2004.1320008","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. 20th International Conference on Data Engineering","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.iisc.ac.in:4493","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196309","display_name":"NOT FOUND REPOSITORY (Indian Institute of Science Bangalore)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59270414","host_organization_name":"Indian Institute of Science Bangalore","host_organization_lineage":["https://openalex.org/I59270414"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.305.146","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.305.146","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dsl.serc.iisc.ernet.in/publications/conference/spine.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.565.6118","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.565.6118","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://eprints.iisc.ernet.in/4493/1/SPINE.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W938539187","https://openalex.org/W1540616176","https://openalex.org/W1557406054","https://openalex.org/W1972770363","https://openalex.org/W1990061958","https://openalex.org/W2030962049","https://openalex.org/W2055043387","https://openalex.org/W2090957374","https://openalex.org/W2103014446","https://openalex.org/W2141812575","https://openalex.org/W2152331922","https://openalex.org/W2158874082","https://openalex.org/W2221876819","https://openalex.org/W2585822323","https://openalex.org/W2610179052","https://openalex.org/W4236236547","https://openalex.org/W4285719527","https://openalex.org/W6632287593","https://openalex.org/W6688779571"],"related_works":["https://openalex.org/W2003608043","https://openalex.org/W153119118","https://openalex.org/W2583658747","https://openalex.org/W2405892617","https://openalex.org/W2082932857","https://openalex.org/W2158874082","https://openalex.org/W4293529780","https://openalex.org/W1575722140","https://openalex.org/W2073921136","https://openalex.org/W3157818565"],"abstract_inverted_index":{"The":[0],"indexing":[1],"technique":[2],"commonly":[3],"used":[4],"for":[5,81,122,126,167,193],"long":[6],"strings,":[7],"such":[8],"as":[9,172],"genomes,":[10],"is":[11,16,102,181],"the":[12,24,42,68,72,89,106,113,132,179,184],"suffix":[13,160,175],"tree,":[14],"which":[15],"based":[17,36],"on":[18,37,140],"a":[19,49,58,62,76,109,141],"vertical":[20],"(intra-path)":[21],"compaction":[22,40],"of":[23,41,57,65,79,100,116,134,143,159,186],"underlying":[25,69],"trie":[26,53,107],"structure.":[27],"We":[28,119],"investigate":[29],"an":[30],"alternative":[31],"approach":[32],"to":[33,130,174],"index":[34,92,129,180],"building,":[35],"horizontal":[38,117],"(inter-path)":[39],"trie.":[43],"In":[44],"particular,":[45],"we":[46],"present":[47],"SPINE,":[48],"carefully":[50],"engineered":[51],"horizontally-compacted":[52],"index.":[54],"SPINE":[55,101,123,151,163],"consists":[56],"backbone":[59,90],"formed":[60],"by":[61,75],"linear":[63,110],"chain":[64],"nodes":[66,73],"representing":[67,112],"string,":[70],"with":[71,195],"connected":[74],"rich":[77],"set":[78],"edges":[80],"facilitating":[82],"fast":[83],"forward":[84],"and":[85,94,125,146,170],"backward":[86],"traversals":[87],"over":[88],"during":[91],"construction":[93,124,169],"query":[95,135],"search.":[96],"A":[97],"special":[98],"feature":[99],"that":[103,150],"it":[104,190],"collapses":[105],"into":[108],"structure,":[111],"logical":[114],"extreme":[115],"compaction.":[118],"describe":[120],"algorithms":[121],"searching":[127],"this":[128],"find":[131],"occurrences":[133],"patterns.":[136],"Our":[137],"experimental":[138],"results":[139],"variety":[142],"real":[144],"genomic":[145],"proteomic":[147],"strings":[148],"show":[149],"requires":[152],"significantly":[153],"less":[154],"space":[155],"than":[156],"standard":[157],"implementations":[158],"trees.":[161],"Further,":[162],"takes":[164],"lesser":[165],"time":[166],"both":[168],"search":[171],"compared":[173],"trees,":[176],"especially":[177],"when":[178],"disk-resident.":[182],"Finally,":[183],"linearity":[185],"its":[187],"structure":[188],"makes":[189],"more":[191],"amenable":[192],"integration":[194],"database":[196],"engines.":[197]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
