{"id":"https://openalex.org/W2104655596","doi":"https://doi.org/10.1109/icde.2003.1260885","title":"XomatiQ: living with genomes, proteomes, relations and a little bit of XML","display_name":"XomatiQ: living with genomes, proteomes, relations and a little bit of XML","publication_year":2005,"publication_date":"2005-04-12","ids":{"openalex":"https://openalex.org/W2104655596","doi":"https://doi.org/10.1109/icde.2003.1260885","mag":"2104655596"},"language":"en","primary_location":{"id":"doi:10.1109/icde.2003.1260885","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2003.1260885","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 19th International Conference on Data Engineering (Cat. No.03CH37405)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061002947","display_name":"Sourav S. Bhowmick","orcid":"https://orcid.org/0000-0003-1957-8016"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"S.S. Bhowmick","raw_affiliation_strings":["School of Computer Engineering, Nanyang Technological University, Singapore","Nanyang Technological University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Nanyang Technological University","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058073147","display_name":"Pedro E. Cruz","orcid":"https://orcid.org/0000-0002-3335-9234"},"institutions":[{"id":"https://openalex.org/I4210156278","display_name":"Double Helix (United States)","ror":"https://ror.org/05h0qhk33","country_code":"US","type":"company","lineage":["https://openalex.org/I4210156278"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. Cruz","raw_affiliation_strings":["Helixense Private Limited, Singapore","[Helixense Private Limited, Singapore]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helixense Private Limited, Singapore","institution_ids":[]},{"raw_affiliation_string":"[Helixense Private Limited, Singapore]","institution_ids":["https://openalex.org/I4210156278"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028351400","display_name":"Amey Laud","orcid":null},"institutions":[{"id":"https://openalex.org/I4210156278","display_name":"Double Helix (United States)","ror":"https://ror.org/05h0qhk33","country_code":"US","type":"company","lineage":["https://openalex.org/I4210156278"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Laud","raw_affiliation_strings":["Helixense Private Limited, Singapore","[Helixense Private Limited, Singapore]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Helixense Private Limited, Singapore","institution_ids":[]},{"raw_affiliation_string":"[Helixense Private Limited, Singapore]","institution_ids":["https://openalex.org/I4210156278"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.20648175,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"266","issue":null,"first_page":"857","last_page":"868"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8387722969055176},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.6658204197883606},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.5885654091835022},{"id":"https://openalex.org/keywords/tuple","display_name":"Tuple","score":0.5030133128166199},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.49303290247917175},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4883567988872528},{"id":"https://openalex.org/keywords/xml-database","display_name":"XML database","score":0.47184398770332336},{"id":"https://openalex.org/keywords/xml-framework","display_name":"XML framework","score":0.4407757818698883},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.4135618209838867},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39938515424728394},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24223768711090088},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.1915639042854309},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.18044593930244446},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12455868721008301}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8387722969055176},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.6658204197883606},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.5885654091835022},{"id":"https://openalex.org/C118930307","wikidata":"https://www.wikidata.org/wiki/Q600590","display_name":"Tuple","level":2,"score":0.5030133128166199},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.49303290247917175},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4883567988872528},{"id":"https://openalex.org/C183068750","wikidata":"https://www.wikidata.org/wiki/Q357393","display_name":"XML database","level":3,"score":0.47184398770332336},{"id":"https://openalex.org/C21761406","wikidata":"https://www.wikidata.org/wiki/Q8042330","display_name":"XML framework","level":3,"score":0.4407757818698883},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.4135618209838867},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39938515424728394},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24223768711090088},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.1915639042854309},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.18044593930244446},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12455868721008301},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/icde.2003.1260885","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icde.2003.1260885","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 19th International Conference on Data Engineering (Cat. No.03CH37405)","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.565.7747","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.565.7747","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cais.ntu.edu.sg/~assourav/papers/ICDE-03-Xomatiq.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1030918","https://openalex.org/W19996625","https://openalex.org/W80675065","https://openalex.org/W129475153","https://openalex.org/W172857819","https://openalex.org/W272728992","https://openalex.org/W1532676075","https://openalex.org/W1589399220","https://openalex.org/W1730348256","https://openalex.org/W1751026738","https://openalex.org/W1916576906","https://openalex.org/W1979837251","https://openalex.org/W1981671919","https://openalex.org/W1994127362","https://openalex.org/W1994694191","https://openalex.org/W2004818131","https://openalex.org/W2022834249","https://openalex.org/W2027998177","https://openalex.org/W2037199477","https://openalex.org/W2062792922","https://openalex.org/W2088468751","https://openalex.org/W2097111588","https://openalex.org/W2102017976","https://openalex.org/W2103487267","https://openalex.org/W2108014443","https://openalex.org/W2109464129","https://openalex.org/W2110459974","https://openalex.org/W2112404637","https://openalex.org/W2116602925","https://openalex.org/W2117720828","https://openalex.org/W2119412782","https://openalex.org/W2133787379","https://openalex.org/W2141195725","https://openalex.org/W2143299777","https://openalex.org/W2158358034","https://openalex.org/W2160948978","https://openalex.org/W2161666572","https://openalex.org/W2164649389","https://openalex.org/W2165286227","https://openalex.org/W2168605051","https://openalex.org/W4232287748","https://openalex.org/W4233419801","https://openalex.org/W4248234957","https://openalex.org/W6600036078","https://openalex.org/W6635129003","https://openalex.org/W6640170594","https://openalex.org/W6676678128","https://openalex.org/W6683752738","https://openalex.org/W6684721968","https://openalex.org/W7073612800"],"related_works":["https://openalex.org/W119841348","https://openalex.org/W2057416894","https://openalex.org/W316061934","https://openalex.org/W4312445213","https://openalex.org/W2002407106","https://openalex.org/W2912746893","https://openalex.org/W624394832","https://openalex.org/W2390578122","https://openalex.org/W54565381","https://openalex.org/W2122772764"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3],"describe":[4],"a":[5,99],"system":[6],"called":[7],"XomatiQ":[8,21,69,104,116],"to":[9,87],"ad-dress":[10],"the":[11,27,36,48,75,112],"problem":[12],"of":[13,18,26,57,74,95],"integration,":[14],"querying":[15,108],"and":[16,47,60,90],"correlation":[17],"biological":[19],"data.":[20],"is":[22,70],"an":[23],"integral":[24],"part":[25],"ge-nomics":[28],"Research":[29],"Network":[30],"Architecture":[31],"(gRNA).":[32],"The":[33,79,103],"gRNA":[34],"provides":[35,105],"development":[37],"environment":[38],"in":[39,51,98],"which":[40,52],"new":[41],"appli-cations":[42],"can":[43,54],"be":[44],"quickly":[45],"written,":[46],"deployment":[49],"environ-ment":[50],"they":[53],"systematically":[55],"avail":[56],"computing":[58],"resources":[59],"integrate":[61],"information":[62],"from":[63,84],"distributed":[64],"bio-logical":[65],"data":[66,83,110],"sources.":[67],"Specifically,":[68],"build":[71],"on":[72],"top":[73],"Data":[76,80],"Hounds":[77,81],"component.":[78],"trans-forms":[82],"various":[85],"sources":[86],"XML":[88,109],"format":[89],"loads":[91],"them":[92],"into":[93],"tuples":[94],"relational":[96,114],"tables":[97],"standard":[100],"commer-cial":[101],"DBMS.":[102],"capability":[106],"for":[107],"using":[111,121],"underlying":[113],"engine.":[115],"has":[117],"been":[118],"fully":[119],"implemented":[120],"Java.":[122],"1":[123]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}