{"id":"https://openalex.org/W3162745693","doi":"https://doi.org/10.1109/iccabs.2016.7802794","title":"A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms","display_name":"A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms","publication_year":2016,"publication_date":"2016-10-01","ids":{"openalex":"https://openalex.org/W3162745693","doi":"https://doi.org/10.1109/iccabs.2016.7802794","mag":"3162745693"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2016.7802794","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2016.7802794","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107809749","display_name":"Sing\u2010Hoi Sze","orcid":null},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sing-Hoi Sze","raw_affiliation_strings":["Department of Computer Science and Engineering, Department of Biochemistry & Biophysics, Texas A&M University, College Station, 77843, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Department of Biochemistry & Biophysics, Texas A&M University, College Station, 77843, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090427752","display_name":"Jonathan J. Parrott","orcid":"https://orcid.org/0000-0002-3612-3999"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan J. Parrott","raw_affiliation_strings":["Department of Entomology, Texas A&M University, College Station, 77843, USA"],"affiliations":[{"raw_affiliation_string":"Department of Entomology, Texas A&M University, College Station, 77843, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039599341","display_name":"Aaron M. Tarone","orcid":"https://orcid.org/0000-0003-0965-7634"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron M. Tarone","raw_affiliation_strings":["Department of Entomology, Texas A&M University, College Station, 77843, USA"],"affiliations":[{"raw_affiliation_string":"Department of Entomology, Texas A&M University, College Station, 77843, USA","institution_ids":["https://openalex.org/I91045830"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5107809749"],"corresponding_institution_ids":["https://openalex.org/I91045830"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19910233,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.7549819946289062},{"id":"https://openalex.org/keywords/divide-and-conquer-algorithms","display_name":"Divide and conquer algorithms","score":0.7137566804885864},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6830774545669556},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6700474619865417},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.5407289266586304},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5307592749595642},{"id":"https://openalex.org/keywords/de-novo-transcriptome-assembly","display_name":"De novo transcriptome assembly","score":0.5294278264045715},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.48647329211235046},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.370268315076828},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27424392104148865},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11674061417579651},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10900136828422546},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09697836637496948},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.08062899112701416}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7549819946289062},{"id":"https://openalex.org/C71559656","wikidata":"https://www.wikidata.org/wiki/Q671298","display_name":"Divide and conquer algorithms","level":2,"score":0.7137566804885864},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6830774545669556},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6700474619865417},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5407289266586304},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5307592749595642},{"id":"https://openalex.org/C50489715","wikidata":"https://www.wikidata.org/wiki/Q5244960","display_name":"De novo transcriptome assembly","level":5,"score":0.5294278264045715},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.48647329211235046},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.370268315076828},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27424392104148865},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11674061417579651},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10900136828422546},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09697836637496948},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.08062899112701416},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2016.7802794","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2016.7802794","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4317780692","https://openalex.org/W4252248862","https://openalex.org/W4244502392","https://openalex.org/W3091263951","https://openalex.org/W4246813243","https://openalex.org/W1021674602","https://openalex.org/W2567043477","https://openalex.org/W2581777896","https://openalex.org/W2733793436","https://openalex.org/W4311517665"],"abstract_inverted_index":{"While":[0],"high-throughput":[1],"sequencing":[2],"has":[3,18],"facilitated":[4],"studies":[5],"of":[6,33],"entire":[7],"transcriptomes":[8],"in":[9],"non-model":[10],"organisms":[11],"along":[12],"with":[13,43],"differential":[14],"expression":[15],"analysis,":[16],"it":[17],"become":[19],"increasingly":[20],"difficult":[21],"to":[22,29],"perform":[23],"de":[24],"novo":[25],"transcriptome":[26],"assemblies":[27],"due":[28],"the":[30],"large":[31],"amount":[32],"libraries,":[34],"which":[35],"include":[36],"many":[37],"experimental":[38],"conditions":[39],"or":[40],"developmental":[41],"stages":[42],"replicated":[44],"experiments.":[45]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}