{"id":"https://openalex.org/W2561284027","doi":"https://doi.org/10.1109/iccabs.2016.7802787","title":"Detecting patterns of co-variation in deep-sequenced virus populations","display_name":"Detecting patterns of co-variation in deep-sequenced virus populations","publication_year":2016,"publication_date":"2016-10-01","ids":{"openalex":"https://openalex.org/W2561284027","doi":"https://doi.org/10.1109/iccabs.2016.7802787","mag":"2561284027"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2016.7802787","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2016.7802787","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064686313","display_name":"Susana Posada-C\u00e9spedes","orcid":"https://orcid.org/0000-0002-7459-8186"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Susana Posada-Cespedes","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021595697","display_name":"David Seifert","orcid":"https://orcid.org/0000-0003-4739-5110"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"David Seifert","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035497488","display_name":"Niko Beerenwinkel","orcid":"https://orcid.org/0000-0002-0573-6119"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Niko Beerenwinkel","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5064686313"],"corresponding_institution_ids":["https://openalex.org/I35440088"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12474798,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5971707105636597},{"id":"https://openalex.org/keywords/multinomial-distribution","display_name":"Multinomial distribution","score":0.5395883917808533},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.47210708260536194},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.46476492285728455},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44600358605384827},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.43769440054893494},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.43102535605430603},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3736698031425476},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36319461464881897},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2453395128250122},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.16941365599632263},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1435619294643402},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10973882675170898},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08984553813934326},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07939991354942322}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5971707105636597},{"id":"https://openalex.org/C192065140","wikidata":"https://www.wikidata.org/wiki/Q1147928","display_name":"Multinomial distribution","level":2,"score":0.5395883917808533},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.47210708260536194},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.46476492285728455},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44600358605384827},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.43769440054893494},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.43102535605430603},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3736698031425476},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36319461464881897},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2453395128250122},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.16941365599632263},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1435619294643402},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10973882675170898},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08984553813934326},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07939991354942322},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2016.7802787","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2016.7802787","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W2020939898","https://openalex.org/W2219498660"],"related_works":["https://openalex.org/W3132115146","https://openalex.org/W1969673184","https://openalex.org/W2947266077","https://openalex.org/W2619166255","https://openalex.org/W1539994441","https://openalex.org/W2472738690","https://openalex.org/W3011303654","https://openalex.org/W2359210733","https://openalex.org/W1970342753","https://openalex.org/W3089600567"],"abstract_inverted_index":{"Advances":[0],"in":[1,49],"high-throughput":[2],"sequencing":[3,56],"(HTS)":[4],"technologies":[5],"have":[6],"facilitated":[7],"the":[8,11,25,31,43,68,75,81],"assessment":[9],"of":[10,14,22,27,33,45,47,64,70,72],"genetic":[12],"diversity":[13],"heterogeneous":[15],"virus":[16,51],"populations":[17],"at":[18],"an":[19],"unprecedented":[20],"level":[21],"detail.":[23],"However,":[24],"existence":[26],"technical":[28],"errors":[29],"confounds":[30],"identification":[32,44],"truthful":[34],"variants.":[35],"Here,":[36],"we":[37,58],"present":[38],"a":[39],"comparative":[40],"approach":[41],"for":[42,60,80],"patterns":[46,71],"co-variation":[48],"deep-sequenced":[50],"populations.":[52],"In":[53],"addition":[54],"to":[55],"errors,":[57],"account":[59],"other":[61],"unknown":[62],"sources":[63],"error":[65],"by":[66],"modeling":[67],"occurrences":[69],"mutations":[73],"using":[74],"Dirichlet":[76],"distribution":[77],"as":[78],"prior":[79],"multinomial":[82],"distribution.":[83]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
