{"id":"https://openalex.org/W3006811874","doi":"https://doi.org/10.1109/iccabs.2016.7802770","title":"Higher recall in metagenomic sequence classification exploiting Overlapping Reads","display_name":"Higher recall in metagenomic sequence classification exploiting Overlapping Reads","publication_year":2016,"publication_date":"2016-10-01","ids":{"openalex":"https://openalex.org/W3006811874","doi":"https://doi.org/10.1109/iccabs.2016.7802770","mag":"3006811874"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2016.7802770","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2016.7802770","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000463952","display_name":"Samuele Girotto","orcid":"https://orcid.org/0000-0001-5730-9402"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Samuele Girotto","raw_affiliation_strings":["Department of Information Engineering, University of Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067815810","display_name":"Matteo Comin","orcid":"https://orcid.org/0000-0001-8545-4359"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Matteo Comin","raw_affiliation_strings":["Department of Information Engineering, University of Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079827122","display_name":"Cinzia Pizzi","orcid":"https://orcid.org/0000-0002-6616-4003"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Cinzia Pizzi","raw_affiliation_strings":["Department of Information Engineering, University of Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5000463952"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":null,"apc_paid":null,"fwci":0.1667,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6546935,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.905552327632904},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.6953766345977783},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.647487223148346},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5866151452064514},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.5456874370574951},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.520969033241272},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49163419008255005},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38651421666145325},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33759474754333496},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3334731459617615},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25993335247039795},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.11503183841705322},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07783883810043335},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06072807312011719}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.905552327632904},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.6953766345977783},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.647487223148346},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5866151452064514},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.5456874370574951},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.520969033241272},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49163419008255005},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38651421666145325},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33759474754333496},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3334731459617615},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25993335247039795},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.11503183841705322},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07783883810043335},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06072807312011719},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/iccabs.2016.7802770","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2016.7802770","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},{"id":"pmh:oai:www.research.unipd.it:11577/3227439","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3227439","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5099999904632568,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2003347102","https://openalex.org/W2159954944","https://openalex.org/W2515836512"],"related_works":["https://openalex.org/W1667647204","https://openalex.org/W2404647514","https://openalex.org/W4247536566","https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W4241418540","https://openalex.org/W2358294942","https://openalex.org/W4367460280"],"abstract_inverted_index":{"In":[0],"recent":[1],"years":[2],"the":[3,25,33,42,48,78],"ability":[4],"to":[5,30,66],"sequence":[6],"microbiomic":[7],"samples":[8],"has":[9],"enable":[10],"a":[11,37],"number":[12,74],"of":[13,24,41,50,56,63,70,75],"applications":[14],"in":[15,54,68],"different":[16],"fields":[17],"like":[18],"ecology,":[19],"medicine":[20],"and":[21],"microbiology.":[22],"One":[23],"most":[26],"important":[27],"problems":[28],"is":[29],"taxonomically":[31],"classify":[32],"reads":[34],"extracted":[35],"from":[36],"metagenomic":[38],"sample.":[39],"Most":[40],"methods":[43,59],"currently":[44],"available":[45],"focus":[46],"on":[47],"classification":[49],"individual":[51],"reads.":[52],"While":[53],"terms":[55,69],"precision":[57],"these":[58],"have":[60],"reached":[61],"percentages":[62],"correctness":[64],"close":[65],"perfection,":[67],"recall":[71],"(the":[72],"actual":[73],"classified":[76],"reads)":[77],"performances":[79],"fall":[80],"at":[81],"around":[82],"50%.":[83]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
