{"id":"https://openalex.org/W2183914651","doi":"https://doi.org/10.1109/iccabs.2015.7344725","title":"Algorithms for prediction of viral transmission using analysis of intra-host viral populations","display_name":"Algorithms for prediction of viral transmission using analysis of intra-host viral populations","publication_year":2015,"publication_date":"2015-10-01","ids":{"openalex":"https://openalex.org/W2183914651","doi":"https://doi.org/10.1109/iccabs.2015.7344725","mag":"2183914651"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2015.7344725","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2015.7344725","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052456631","display_name":"Pavel Skums","orcid":"https://orcid.org/0000-0003-4007-5624"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pavel Skums","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, GA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046953828","display_name":"Olga Glebova","orcid":"https://orcid.org/0000-0002-7566-0471"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olga Glebova","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, GA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018798814","display_name":"David S. Campo","orcid":"https://orcid.org/0000-0002-8970-3436"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David S. Campo","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, GA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100744739","display_name":"Nana Li","orcid":"https://orcid.org/0000-0001-7082-0379"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nana Li","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, GA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027520347","display_name":"Zoya Dimitrova","orcid":null},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zoya Dimitrova","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, GA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062028212","display_name":"Seth Sims","orcid":"https://orcid.org/0000-0003-2126-0197"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seth Sims","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, GA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021009981","display_name":"Leonid Bunimovich","orcid":"https://orcid.org/0000-0003-1261-466X"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonid Bunimovich","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, GA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072751459","display_name":"Alex Zelikovsky","orcid":"https://orcid.org/0000-0003-4424-4691"},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Zelikovsky","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, GA","institution_ids":["https://openalex.org/I1289490764"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085435304","display_name":"Yury Khudyakov","orcid":null},"institutions":[{"id":"https://openalex.org/I1289490764","display_name":"Centers for Disease Control and Prevention","ror":"https://ror.org/042twtr12","country_code":"US","type":"funder","lineage":["https://openalex.org/I1289490764","https://openalex.org/I1299022934"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yury Khudyakov","raw_affiliation_strings":["Centers for Disease Control and Prevention, Atlanta, GA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centers for Disease Control and Prevention, Atlanta, GA","institution_ids":["https://openalex.org/I1289490764"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.07781827,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9553999900817871,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transmission","display_name":"Transmission (telecommunications)","score":0.7517069578170776},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6560639142990112},{"id":"https://openalex.org/keywords/outbreak","display_name":"Outbreak","score":0.6479276418685913},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6431692838668823},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5876348614692688},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5234189033508301},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.432149738073349},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35060811042785645},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34521782398223877},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3028481602668762},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21596521139144897},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.08555814623832703},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06456130743026733}],"concepts":[{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.7517069578170776},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6560639142990112},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.6479276418685913},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6431692838668823},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5876348614692688},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5234189033508301},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.432149738073349},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35060811042785645},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34521782398223877},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3028481602668762},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21596521139144897},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.08555814623832703},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06456130743026733},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2015.7344725","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2015.7344725","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.800000011920929,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2373635223","https://openalex.org/W2412355096","https://openalex.org/W1990012352","https://openalex.org/W2431766951","https://openalex.org/W4385969441","https://openalex.org/W127458931","https://openalex.org/W2362266265","https://openalex.org/W3028429280","https://openalex.org/W2557977292","https://openalex.org/W2127290136"],"abstract_inverted_index":{"Molecular":[0],"analysis":[1],"has":[2],"become":[3],"one":[4],"of":[5,26,31,74],"the":[6,51,55],"major":[7],"tools":[8],"used":[9],"for":[10,23,33,66,77],"viral":[11],"outbreak":[12],"investigation":[13],"and":[14,29,40,62],"transmission":[15,27,67],"network":[16],"inference.":[17],"We":[18],"present":[19],"two":[20],"novel":[21],"methods":[22,58],"accurate":[24],"identification":[25,76],"clusters":[28],"sources":[30],"infection":[32],"highly":[34],"heterogeneous":[35],"viruses":[36],"such":[37],"as":[38,69,71],"HIV":[39],"HCV.":[41],"Validation":[42],"on":[43],"data":[44],"obtained":[45],"from":[46],"HCV":[47],"outbreaks":[48],"shows":[49],"that":[50],"proposed":[52],"algorithms":[53],"outperform":[54],"state-of-the-art":[56],"consensus-based":[57],"both":[59],"in":[60,72],"true":[61],"false":[63],"positive":[64],"rates":[65],"prediction,":[68],"well":[70],"accuracy":[73],"source":[75],"outbreaks.":[78]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
