{"id":"https://openalex.org/W2077728201","doi":"https://doi.org/10.1109/iccabs.2014.6863931","title":"Viral quasispecies assembly from paired-end reads","display_name":"Viral quasispecies assembly from paired-end reads","publication_year":2014,"publication_date":"2014-06-01","ids":{"openalex":"https://openalex.org/W2077728201","doi":"https://doi.org/10.1109/iccabs.2014.6863931","mag":"2077728201"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2014.6863931","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2014.6863931","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060717574","display_name":"Armin T\u00f6pfer","orcid":"https://orcid.org/0000-0003-1637-1466"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Armin Topfer","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035497488","display_name":"Niko Beerenwinkel","orcid":"https://orcid.org/0000-0002-0573-6119"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Niko Beerenwinkel","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics, Switzerland"],"affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5060717574"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10758828,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/viral-quasispecies","display_name":"Viral quasispecies","score":0.9888302087783813},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.6716480851173401},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.5288358926773071},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5181297659873962},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.47550448775291443},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42410242557525635},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"Genetic diversity","score":0.42329251766204834},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34185516834259033},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.33672648668289185},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.195794016122818},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18072330951690674},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.1485082507133484},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10472297668457031}],"concepts":[{"id":"https://openalex.org/C14500911","wikidata":"https://www.wikidata.org/wiki/Q3413375","display_name":"Viral quasispecies","level":4,"score":0.9888302087783813},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.6716480851173401},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.5288358926773071},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5181297659873962},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.47550448775291443},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42410242557525635},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.42329251766204834},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34185516834259033},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.33672648668289185},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.195794016122818},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18072330951690674},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.1485082507133484},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10472297668457031},{"id":"https://openalex.org/C2776408679","wikidata":"https://www.wikidata.org/wiki/Q708693","display_name":"Hepatitis C virus","level":3,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2014.6863931","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2014.6863931","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W2027969303","https://openalex.org/W4319054174"],"related_works":["https://openalex.org/W2370565492","https://openalex.org/W2016766059","https://openalex.org/W2029741357","https://openalex.org/W2144907742","https://openalex.org/W1748700469","https://openalex.org/W2009366069","https://openalex.org/W2620872782","https://openalex.org/W2086431635","https://openalex.org/W2073918065","https://openalex.org/W4253376477"],"abstract_inverted_index":{"Viruses":[0],"can":[1,17],"display":[2],"high":[3],"intra-patient":[4],"genetic":[5],"diversity.":[6],"A":[7],"single":[8],"infected":[9],"individual":[10],"hosts":[11],"billions":[12],"of":[13,23,46],"virus":[14],"particles":[15],"that":[16],"be":[18],"summarized":[19],"as":[20,38],"a":[21,39,43],"set":[22],"genetically":[24],"different":[25],"strains,":[26],"called":[27],"haplotypes,":[28],"with":[29],"their":[30],"respective":[31],"frequencies.":[32],"The":[33],"haplotype":[34],"distribution,":[35],"also":[36],"known":[37],"viral":[40],"quasispecies,":[41],"is":[42],"key":[44],"determinent":[45],"virulence,":[47],"pathogenesis,":[48],"and":[49],"treatment":[50],"outcome.":[51]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
