{"id":"https://openalex.org/W1976579277","doi":"https://doi.org/10.1109/iccabs.2014.6863925","title":"Parameter discovery for stochastic computational models in systems biology using Bayesian model checking","display_name":"Parameter discovery for stochastic computational models in systems biology using Bayesian model checking","publication_year":2014,"publication_date":"2014-06-01","ids":{"openalex":"https://openalex.org/W1976579277","doi":"https://doi.org/10.1109/iccabs.2014.6863925","mag":"1976579277"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2014.6863925","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2014.6863925","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://stars.library.ucf.edu/scopus2010/7940","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081485727","display_name":"Faraz Hussain","orcid":"https://orcid.org/0000-0001-8971-1850"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Faraz Hussain","raw_affiliation_strings":["Dept. of Electrical Engineering and Computer Science, University of Central Florida","Department of Electrical Engineering and Computer Science, University of Central Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Electrical Engineering and Computer Science, University of Central Florida","institution_ids":["https://openalex.org/I106165777"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Central Florida, USA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042353780","display_name":"Christopher J. Langmead","orcid":"https://orcid.org/0000-0001-7521-6736"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Langmead","raw_affiliation_strings":["School of Computer Science, Carnegie Mellon University","School of Computer Science, Carnegie Mellon University, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Carnegie Mellon University","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"School of Computer Science, Carnegie Mellon University, USA,","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076170464","display_name":"Qi Mi","orcid":"https://orcid.org/0000-0002-0197-8671"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qi Mi","raw_affiliation_strings":["Dept. of Sports Medicine and Nutrition, University of Pittsburgh","Dept. of Sports Medicine and Nutrition, University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Sports Medicine and Nutrition, University of Pittsburgh","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Dept. of Sports Medicine and Nutrition, University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018979051","display_name":"Joyeeta Dutta\u2010Moscato","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joyeeta Dutta-Moscato","raw_affiliation_strings":["Dept. of Biomedical Informatics, University of Pittsburgh","Department of Biomedical Informatics, University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Biomedical Informatics, University of Pittsburgh","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073022985","display_name":"Yoram Vodovotz","orcid":"https://orcid.org/0000-0002-4389-8768"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210155891","display_name":"McGowan Institute for Regenerative Medicine","ror":"https://ror.org/04js6xx21","country_code":"US","type":"facility","lineage":["https://openalex.org/I170201317","https://openalex.org/I4210098814","https://openalex.org/I4210134769","https://openalex.org/I4210155891"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoram Vodovotz","raw_affiliation_strings":["Dept. of Surgery and McGowan, University of Pittsburgh","Dept. of Surgery and McGowan Institute of Regenerative Medicine, University of Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Surgery and McGowan, University of Pittsburgh","institution_ids":["https://openalex.org/I170201317","https://openalex.org/I4210155891"]},{"raw_affiliation_string":"Dept. of Surgery and McGowan Institute of Regenerative Medicine, University of Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075978538","display_name":"Sumit Kumar Jha","orcid":"https://orcid.org/0000-0003-0354-2940"},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sumit K. Jha","raw_affiliation_strings":["Dept. of Electrical Engineering and Computer Science, University of Central Florida","Department of Electrical Engineering and Computer Science, University of Central Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Electrical Engineering and Computer Science, University of Central Florida","institution_ids":["https://openalex.org/I106165777"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Central Florida, USA","institution_ids":["https://openalex.org/I106165777"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.08094145,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10142","display_name":"Formal Methods in Verification","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parameterized-complexity","display_name":"Parameterized complexity","score":0.5803425312042236},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.572476327419281},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4930588901042938},{"id":"https://openalex.org/keywords/bayes-theorem","display_name":"Bayes' theorem","score":0.45158419013023376},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4424424171447754},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.4204733967781067},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3996100425720215}],"concepts":[{"id":"https://openalex.org/C165464430","wikidata":"https://www.wikidata.org/wiki/Q1570441","display_name":"Parameterized complexity","level":2,"score":0.5803425312042236},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.572476327419281},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4930588901042938},{"id":"https://openalex.org/C207201462","wikidata":"https://www.wikidata.org/wiki/Q182505","display_name":"Bayes' theorem","level":3,"score":0.45158419013023376},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4424424171447754},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.4204733967781067},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3996100425720215}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/iccabs.2014.6863925","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2014.6863925","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},{"id":"pmh:oai:stars.library.ucf.edu:scopus2010-8939","is_oa":true,"landing_page_url":"https://stars.library.ucf.edu/scopus2010/7940","pdf_url":null,"source":{"id":"https://openalex.org/S4210172555","display_name":"Journal of International Crisis and Risk Communication Research","issn_l":"2576-0017","issn":["2576-0017","2576-0025"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus Export 2010-2014","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:stars.library.ucf.edu:scopus2010-8939","is_oa":true,"landing_page_url":"https://stars.library.ucf.edu/scopus2010/7940","pdf_url":null,"source":{"id":"https://openalex.org/S4210172555","display_name":"Journal of International Crisis and Risk Communication Research","issn_l":"2576-0017","issn":["2576-0017","2576-0025"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus Export 2010-2014","raw_type":"text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W339627914","https://openalex.org/W1516254868","https://openalex.org/W1569248486","https://openalex.org/W1830944000","https://openalex.org/W1990323516","https://openalex.org/W2031188261","https://openalex.org/W2037689113","https://openalex.org/W2092578710","https://openalex.org/W2139038704","https://openalex.org/W2141133391","https://openalex.org/W2171501814","https://openalex.org/W2340735175","https://openalex.org/W2913459036","https://openalex.org/W3088538535"],"related_works":["https://openalex.org/W2051058708","https://openalex.org/W1494268238","https://openalex.org/W154868527","https://openalex.org/W1983207144","https://openalex.org/W2490706771","https://openalex.org/W2480116122","https://openalex.org/W4255576661","https://openalex.org/W1516574938","https://openalex.org/W2625725254","https://openalex.org/W2563912921"],"abstract_inverted_index":{"Parameterized":[0],"probabilistic":[1],"complex":[2],"computational":[3,11],"(P2C2)":[4],"models":[5,74],"are":[6,38,43],"being":[7],"increasingly":[8],"used":[9],"in":[10,72,117],"systems":[12,77],"biology":[13],"for":[14,69],"analyzing":[15],"biological":[16,76],"systems.":[17],"A":[18],"key":[19],"challenge":[20],"is":[21],"to":[22,97],"build":[23],"mechanistic":[24],"P2C2models":[25],"by":[26,106],"combining":[27],"prior":[28],"knowledge":[29],"and":[30,50,61,94,110],"empirical":[31],"data,":[32],"given":[33],"that":[34,128],"certain":[35],"system":[36],"properties":[37],"unknown.":[39],"These":[40],"unknown":[41],"components":[42],"incorporated":[44],"into":[45],"a":[46,57,65,118,130],"model":[47,89,121],"as":[48],"parameters":[49,71,99],"determining":[51],"their":[52],"values":[53],"has":[54],"traditionally":[55],"been":[56],"process":[58],"of":[59,75,100,112,114,122,125,132],"trial":[60],"error.":[62],"We":[63,102],"present":[64],"new":[66],"algorithmic":[67],"procedure":[68],"discovering":[70,107],"agent-based":[73,120],"against":[78],"behavioral":[79],"specifications":[80],"mined":[81],"from":[82],"large":[83],"data-sets.":[84],"Our":[85],"approach":[86],"uses":[87],"Bayesian":[88],"checking,":[90],"sequential":[91],"hypothesis":[92],"testing,":[93],"stochastic":[95],"optimization":[96],"synthesize":[98],"P2C2models.":[101],"demonstrate":[103],"our":[104],"algorithm":[105],"the":[108,123],"amount":[109],"schedule":[111],"doses":[113],"bacterial":[115],"lipopolysaccharide":[116],"clinical":[119,134],"dynamics":[124],"acute":[126],"inflammation":[127],"guarantee":[129],"set":[131],"desired":[133],"outcomes":[135],"with":[136],"high":[137],"probability.":[138]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
