{"id":"https://openalex.org/W2059257539","doi":"https://doi.org/10.1109/iccabs.2014.6863923","title":"Identification of protein interaction methods from biomedical literature","display_name":"Identification of protein interaction methods from biomedical literature","publication_year":2014,"publication_date":"2014-06-01","ids":{"openalex":"https://openalex.org/W2059257539","doi":"https://doi.org/10.1109/iccabs.2014.6863923","mag":"2059257539"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2014.6863923","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2014.6863923","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085530690","display_name":"Deepali Jhamb","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deepali Jhamb","raw_affiliation_strings":["School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073936715","display_name":"Anand Krishnan","orcid":"https://orcid.org/0000-0002-9173-7811"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anand Krishnan","raw_affiliation_strings":["School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008788340","display_name":"Meelia Palakal","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meelia Palakal","raw_affiliation_strings":["School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015777189","display_name":"Yogesh Pandit","orcid":"https://orcid.org/0009-0000-1878-290X"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yogesh Pandit","raw_affiliation_strings":["School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044460012","display_name":"Mathew Palakal","orcid":"https://orcid.org/0000-0002-2990-0999"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mathew J. Palakal","raw_affiliation_strings":["School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics and Computing, Indiana University Purdue University Indianapolis, USA 46202","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University --- Purdue University, Indianapolis, USA 46202#TAB#","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013136525","display_name":"Premkumar Duraiswamy","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Premkumar Duraiswamy","raw_affiliation_strings":["Department of Computer Science and Engineering, Indiana University Purdue University Indianapolis, USA 46202","[Department of Computer Science and Engineering, Indiana University Purdue University Indianapolis, USA 46202]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Indiana University Purdue University Indianapolis, USA 46202","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"[Department of Computer Science and Engineering, Indiana University Purdue University Indianapolis, USA 46202]","institution_ids":["https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I55769427"],"apc_list":null,"apc_paid":null,"fwci":0.1423,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.54388592,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"3","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.7305212020874023},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6610236167907715},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5785639882087708},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5727134346961975},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.26249223947525024},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25201767683029175},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15468847751617432}],"concepts":[{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.7305212020874023},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6610236167907715},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5785639882087708},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5727134346961975},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.26249223947525024},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25201767683029175},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15468847751617432},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2014.6863923","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2014.6863923","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1826790618","https://openalex.org/W2003516452","https://openalex.org/W2043764521","https://openalex.org/W2096601934","https://openalex.org/W2112543617","https://openalex.org/W2114368272","https://openalex.org/W2120011452","https://openalex.org/W2122863289","https://openalex.org/W2127976940","https://openalex.org/W2129129117","https://openalex.org/W2132582966","https://openalex.org/W2139865360","https://openalex.org/W2142786899","https://openalex.org/W2143966396","https://openalex.org/W2148362397","https://openalex.org/W2163485494","https://openalex.org/W2165160727","https://openalex.org/W2168066604","https://openalex.org/W2170652857","https://openalex.org/W6677773337"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2099982459","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W3192210502","https://openalex.org/W1981737222","https://openalex.org/W1569394480","https://openalex.org/W1998222399"],"abstract_inverted_index":{"Proteins":[0],"are":[1,34],"the":[2,22,25,46,49,66,75,79,91,107],"functional":[3],"subunits":[4],"of":[5,24,51,78,100,104,109],"a":[6],"cell":[7],"which":[8],"interact":[9],"with":[10],"each":[11],"other":[12],"to":[13,37,64,89],"carry":[14],"out":[15],"biological":[16,47],"processes.":[17],"Protein":[18],"interaction":[19,71,110],"networks":[20],"form":[21],"backbone":[23],"research":[26],"in":[27],"molecular":[28],"and":[29,41,102],"systems":[30],"biology.":[31],"Although":[32],"there":[33],"available":[35],"methods":[36,44,53,73],"mine":[38],"protein":[39,70,92,93],"interactions":[40],"their":[42],"detection":[43,72],"from":[45,74],"literature,":[48],"accuracy":[50],"these":[52],"is":[54],"quite":[55],"low.":[56],"In":[57],"this":[58],"study,":[59],"we":[60],"applied":[61],"regular":[62],"expressions":[63],"identify":[65],"three":[67],"most":[68],"frequent":[69],"methodology":[76],"section":[77],"full":[80],"text":[81],"articles.":[82],"These":[83],"articles":[84],"were":[85],"then":[86],"further":[87],"used":[88],"extract":[90],"interactions.":[94],"We":[95],"report":[96],"an":[97],"overall":[98],"specificity":[99],"83.6":[101],"sensitivity":[103],"78.2":[105],"for":[106],"identification":[108],"methods.":[111]},"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
