{"id":"https://openalex.org/W1994246191","doi":"https://doi.org/10.1109/iccabs.2013.6629233","title":"Space-efficient read indexing and retrieval based on compressed de Bruijn graphs","display_name":"Space-efficient read indexing and retrieval based on compressed de Bruijn graphs","publication_year":2013,"publication_date":"2013-06-01","ids":{"openalex":"https://openalex.org/W1994246191","doi":"https://doi.org/10.1109/iccabs.2013.6629233","mag":"1994246191"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2013.6629233","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2013.6629233","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037893831","display_name":"Meznah Almutairy","orcid":"https://orcid.org/0000-0001-7254-1867"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meznah Almutairy","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Comput. Sci. & Eng., Michigan State Univ., East Lansing, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Comput. Sci. & Eng., Michigan State Univ., East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027977819","display_name":"Jordan Fish","orcid":"https://orcid.org/0000-0001-8039-094X"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jordan Fish","raw_affiliation_strings":["Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","Comput. Sci. & Eng., Michigan State Univ., East Lansing, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Comput. Sci. & Eng., Michigan State Univ., East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036229691","display_name":"C. Titus Brown","orcid":"https://orcid.org/0000-0001-6001-2677"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. Titus Brown","raw_affiliation_strings":["Computer Science and Engineering, Microbiology and Molecular Genetics, East Lansing, MI, USA","Comput. Sci. & Eng., Microbiol. & Mol. Genetics, East Lansing, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Microbiology and Molecular Genetics, East Lansing, MI, USA","institution_ids":[]},{"raw_affiliation_string":"Comput. Sci. & Eng., Microbiol. & Mol. Genetics, East Lansing, MI, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11478","display_name":"Caching and Content Delivery","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12016","display_name":"Web Data Mining and Analysis","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.8624182939529419},{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.8545023202896118},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.8476471900939941},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7857033610343933},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4663001596927643},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.45524781942367554},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.41190627217292786},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3455776870250702},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32280677556991577},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14173951745033264},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.09809577465057373}],"concepts":[{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.8624182939529419},{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.8545023202896118},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.8476471900939941},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7857033610343933},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4663001596927643},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.45524781942367554},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.41190627217292786},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3455776870250702},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32280677556991577},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14173951745033264},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.09809577465057373},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2013.6629233","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2013.6629233","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W2075084832","https://openalex.org/W2163830511"],"related_works":["https://openalex.org/W2562683361","https://openalex.org/W3087469195","https://openalex.org/W2354744388","https://openalex.org/W3125399386","https://openalex.org/W2949121831","https://openalex.org/W3215786367","https://openalex.org/W1908987670","https://openalex.org/W2756186577","https://openalex.org/W2735897904","https://openalex.org/W3021341025"],"abstract_inverted_index":{"We":[0],"introduce":[1],"a":[2,10],"short-read":[3],"indexing":[4],"and":[5],"retrieval":[6],"scheme":[7],"based":[8],"on":[9],"compressed":[11],"de":[12],"Bruijn":[13],"graph":[14],"data":[15],"structure.":[16]},"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
