{"id":"https://openalex.org/W2094611563","doi":"https://doi.org/10.1109/iccabs.2013.6629219","title":"An SVM-based approach for genotyping deletions and insertions with population sequence reads","display_name":"An SVM-based approach for genotyping deletions and insertions with population sequence reads","publication_year":2013,"publication_date":"2013-06-01","ids":{"openalex":"https://openalex.org/W2094611563","doi":"https://doi.org/10.1109/iccabs.2013.6629219","mag":"2094611563"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2013.6629219","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2013.6629219","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006355154","display_name":"Chong Chu","orcid":"https://orcid.org/0000-0002-0796-2339"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chong Chu","raw_affiliation_strings":["Computer Science and Engineering University of Connecticut Storrs, CT","[Computer Science and Engineering, University of Connecticut, Storrs, CT, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering University of Connecticut Storrs, CT","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"[Computer Science and Engineering, University of Connecticut, Storrs, CT, USA]","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050008040","display_name":"Jin Zhang","orcid":"https://orcid.org/0000-0002-9117-2793"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jin Zhang","raw_affiliation_strings":["The Genome Institute Washington University School of Medicine St. Louis, MO","Sch. of Med., Genome Inst., Washington Univ., St. Louis, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Genome Institute Washington University School of Medicine St. Louis, MO","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Sch. of Med., Genome Inst., Washington Univ., St. Louis, MO, USA","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101579568","display_name":"Yufeng Wu","orcid":"https://orcid.org/0000-0003-4988-3521"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yufeng Wu","raw_affiliation_strings":["Computer Science and Engineering University of Connecticut Storrs, CT","[Computer Science and Engineering, University of Connecticut, Storrs, CT, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering University of Connecticut Storrs, CT","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"[Computer Science and Engineering, University of Connecticut, Storrs, CT, USA]","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.8155144453048706},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7619412541389465},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6048954725265503},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5566521286964417},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.553359866142273},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.49455544352531433},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4163486361503601},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3985559344291687},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36601150035858154},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3644885718822479},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30797290802001953},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09471669793128967}],"concepts":[{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.8155144453048706},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7619412541389465},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6048954725265503},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5566521286964417},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.553359866142273},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.49455544352531433},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4163486361503601},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3985559344291687},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36601150035858154},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3644885718822479},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30797290802001953},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09471669793128967},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2013.6629219","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2013.6629219","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1487118672","https://openalex.org/W2056571985","https://openalex.org/W2083870688","https://openalex.org/W2096791516","https://openalex.org/W2123690878","https://openalex.org/W2154397429"],"related_works":["https://openalex.org/W2378369506","https://openalex.org/W2353370357","https://openalex.org/W2806032235","https://openalex.org/W2755824586","https://openalex.org/W4212927541","https://openalex.org/W2044259093","https://openalex.org/W2377518790","https://openalex.org/W2394359576","https://openalex.org/W2463477745","https://openalex.org/W2349105149"],"abstract_inverted_index":{"Because":[0],"of":[1,8,44,51],"the":[2],"low":[3],"quality":[4],"and":[5,34,64],"large":[6],"size":[7],"population":[9,13,38],"sequence":[10,39,55],"data,":[11],"calling":[12,58],"structural":[14],"variations":[15],"(SVs)":[16],"genotypes":[17],"is":[18,47],"still":[19],"a":[20],"challenging":[21],"problem.":[22],"In":[23],"this":[24],"paper,":[25],"we":[26],"propose":[27],"an":[28],"SVM-based":[29],"approach":[30,46,70],"for":[31],"genotyping":[32],"deletion":[33],"insertion":[35],"polymorphisms":[36],"with":[37],"reads.":[40],"The":[41],"key":[42],"idea":[43],"our":[45,69],"combining":[48],"multiple":[49],"sources":[50],"information":[52],"contained":[53],"in":[54,57],"data":[56,66],"genotypes.":[59],"Results":[60],"on":[61],"both":[62],"simulated":[63],"real":[65],"suggest":[67],"that":[68],"works":[71],"well.":[72]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}