{"id":"https://openalex.org/W2070570600","doi":"https://doi.org/10.1109/iccabs.2013.6629202","title":"Higher-order representations of protein structure space","display_name":"Higher-order representations of protein structure space","publication_year":2013,"publication_date":"2013-06-01","ids":{"openalex":"https://openalex.org/W2070570600","doi":"https://doi.org/10.1109/iccabs.2013.6629202","mag":"2070570600"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2013.6629202","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2013.6629202","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103139709","display_name":"Kevin Molloy","orcid":"https://orcid.org/0000-0002-9859-7604"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kevin Molloy","raw_affiliation_strings":["Department of Computer Science, George Mason University, Fairfax, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111882539","display_name":"M. Jennifer Van","orcid":null},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Jennifer Van","raw_affiliation_strings":["Department of Computer Science, George Mason University, Fairfax, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089029917","display_name":"Daniel Barbar\u00e1","orcid":"https://orcid.org/0000-0002-2830-1038"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Barbara","raw_affiliation_strings":["Department of Computer Science, George Mason University, Fairfax, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044722808","display_name":"Amarda Shehu","orcid":"https://orcid.org/0000-0001-5230-4610"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amarda Shehu","raw_affiliation_strings":["Department of Computer Science, Department of Bioengineering, School of Systems Biology, George Mason University, Fairfax, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Department of Bioengineering, School of Systems Biology, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5103139709"],"corresponding_institution_ids":["https://openalex.org/I162714631"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08617258,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.7256457805633545},{"id":"https://openalex.org/keywords/latent-dirichlet-allocation","display_name":"Latent Dirichlet allocation","score":0.7189764976501465},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.694644033908844},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6174630522727966},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.4799661636352539},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4402332901954651},{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.42727723717689514},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36842280626296997},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32367420196533203},{"id":"https://openalex.org/keywords/topic-model","display_name":"Topic model","score":0.28759217262268066},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.23193499445915222}],"concepts":[{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.7256457805633545},{"id":"https://openalex.org/C500882744","wikidata":"https://www.wikidata.org/wiki/Q269236","display_name":"Latent Dirichlet allocation","level":3,"score":0.7189764976501465},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.694644033908844},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6174630522727966},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.4799661636352539},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4402332901954651},{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.42727723717689514},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36842280626296997},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32367420196533203},{"id":"https://openalex.org/C171686336","wikidata":"https://www.wikidata.org/wiki/Q3532085","display_name":"Topic model","level":2,"score":0.28759217262268066},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.23193499445915222},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2013.6629202","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2013.6629202","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1522177097","https://openalex.org/W1880262756","https://openalex.org/W2152655599","https://openalex.org/W2157965775","https://openalex.org/W2159849240","https://openalex.org/W2334889010","https://openalex.org/W4237791300"],"related_works":["https://openalex.org/W3107650560","https://openalex.org/W1973480752","https://openalex.org/W3126382579","https://openalex.org/W4317422773","https://openalex.org/W3123667230","https://openalex.org/W4315588616","https://openalex.org/W2810542905","https://openalex.org/W2129350855","https://openalex.org/W2888805565","https://openalex.org/W1981618449"],"abstract_inverted_index":{"Fragment-based":[0],"representations":[1,17],"of":[2,28,39,87],"protein":[3,29,88],"structure":[4,30,89],"have":[5,18,74],"recently":[6],"been":[7,20],"proposed":[8],"to":[9,24,56],"identify":[10],"remote":[11],"homologs":[12],"with":[13],"reasonable":[14],"accuracy.":[15],"The":[16],"also":[19],"shown":[21],"through":[22,64],"PCA":[23],"elucidate":[25],"low-dimensional":[26,45],"maps":[27,46],"space.":[31,90],"In":[32],"this":[33],"work":[34],"we":[35,51],"conduct":[36],"further":[37],"analysis":[38],"these":[40],"representations,":[41],"showing":[42],"that":[43,71],"the":[44,72],"preserve":[47],"functional":[48],"co-localization.":[49],"Moreover,":[50],"employ":[52],"Latent":[53],"Dirichlet":[54],"Allocation":[55],"investigate":[57],"a":[58,82],"new,":[59],"topic-based":[60],"representation.":[61],"We":[62],"show":[63],"various":[65],"techniques":[66],"adapted":[67],"from":[68],"text":[69],"mining":[70],"topics":[73],"unique":[75],"signatures":[76],"over":[77],"structural":[78],"classes":[79],"and":[80],"allow":[81],"complementary":[83],"yet":[84],"informative":[85],"organization":[86]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
