{"id":"https://openalex.org/W2054406019","doi":"https://doi.org/10.1109/iccabs.2012.6182660","title":"Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences","display_name":"Poster: In silico microarray algorithm: Accurate and fast taxonomic profiling from short read sequences","publication_year":2012,"publication_date":"2012-02-01","ids":{"openalex":"https://openalex.org/W2054406019","doi":"https://doi.org/10.1109/iccabs.2012.6182660","mag":"2054406019"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2012.6182660","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2012.6182660","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036513039","display_name":"Tomoya Tagami","orcid":null},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Tomoya Tagami","raw_affiliation_strings":["Biosciences and Informatics, Keio University, Yokohama, Japan","Biosciences and Informatics, Keio University, Yokohama, 223-8522, Japan"],"affiliations":[{"raw_affiliation_string":"Biosciences and Informatics, Keio University, Yokohama, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Biosciences and Informatics, Keio University, Yokohama, 223-8522, Japan","institution_ids":["https://openalex.org/I203951103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040750410","display_name":"Tsuyoshi Hachiya","orcid":"https://orcid.org/0000-0002-5274-3266"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tsuyoshi Hachiya","raw_affiliation_strings":["Biosciences and Informatics, Keio University, Yokohama, Japan","Biosciences and Informatics, Keio University, Yokohama, 223-8522, Japan"],"affiliations":[{"raw_affiliation_string":"Biosciences and Informatics, Keio University, Yokohama, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Biosciences and Informatics, Keio University, Yokohama, 223-8522, Japan","institution_ids":["https://openalex.org/I203951103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025573915","display_name":"Yasubumi Sakakibara","orcid":"https://orcid.org/0000-0002-6932-3452"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yasubumi Sakakibara","raw_affiliation_strings":["Biosciences and Informatics, Keio University, Yokohama, Japan","Biosciences and Informatics, Keio University, Yokohama, 223-8522, Japan"],"affiliations":[{"raw_affiliation_string":"Biosciences and Informatics, Keio University, Yokohama, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Biosciences and Informatics, Keio University, Yokohama, 223-8522, Japan","institution_ids":["https://openalex.org/I203951103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5036513039"],"corresponding_institution_ids":["https://openalex.org/I203951103"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08787387,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6719462871551514},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6719292402267456},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5149639248847961},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5013370513916016},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4993138313293457},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.49733951687812805},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4790719449520111},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12389358878135681},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.062154918909072876},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.058917731046676636},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05725431442260742}],"concepts":[{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6719462871551514},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6719292402267456},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5149639248847961},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5013370513916016},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4993138313293457},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.49733951687812805},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4790719449520111},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12389358878135681},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.062154918909072876},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.058917731046676636},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05725431442260742},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2012.6182660","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2012.6182660","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2125826054","https://openalex.org/W2152885278","https://openalex.org/W2153138305"],"related_works":["https://openalex.org/W3129816939","https://openalex.org/W2912862995","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2060263731","https://openalex.org/W2003194288","https://openalex.org/W391093122","https://openalex.org/W1521239975","https://openalex.org/W3081644756"],"abstract_inverted_index":{"We":[0],"here":[1],"propose":[2],"a":[3],"novel":[4],"algorithm":[5],"that":[6,32],"can":[7],"accurately":[8],"estimate":[9],"taxonomic":[10],"composition":[11],"of":[12,18],"microbial":[13],"communities":[14],"from":[15,60],"massive":[16],"amount":[17],"short":[19],"read":[20],"sequences":[21],"(60-120":[22],"bp).":[23],"Our":[24],"accuracy":[25],"evaluation":[26],"based":[27],"on":[28],"simulated":[29],"datasets":[30],"demonstrated":[31],"our":[33],"method":[34,46],"achieves":[35],"much":[36],"higher":[37],"accuracies":[38],"than":[39],"previously":[40],"proposed":[41],"methods":[42],"including":[43],"Taxy,":[44],"Qin's":[45],"and":[47],"RDPClassifier.":[48],"The":[49],"source":[50],"code":[51],"is":[52],"freely":[53],"available":[54],"under":[55],"GNU":[56],"Public":[57],"Licence":[58],"(GPL)":[59],"http://ism.dna.bio.keio.ac.jp.":[61]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
