{"id":"https://openalex.org/W2017218420","doi":"https://doi.org/10.1109/iccabs.2012.6182628","title":"Accelerating gene regulatory networks inference through GPU/CUDA programming","display_name":"Accelerating gene regulatory networks inference through GPU/CUDA programming","publication_year":2012,"publication_date":"2012-02-01","ids":{"openalex":"https://openalex.org/W2017218420","doi":"https://doi.org/10.1109/iccabs.2012.6182628","mag":"2017218420"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2012.6182628","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2012.6182628","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090014004","display_name":"Fabrizio Borelli","orcid":"https://orcid.org/0000-0002-1671-4660"},"institutions":[{"id":"https://openalex.org/I71715416","display_name":"Universidade Federal do ABC","ror":"https://ror.org/028kg9j04","country_code":"BR","type":"education","lineage":["https://openalex.org/I71715416"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Fabrizio F. Borelli","raw_affiliation_strings":["Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I71715416"]},{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil","institution_ids":["https://openalex.org/I71715416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012679482","display_name":"Raphael Y. de Camargo","orcid":"https://orcid.org/0000-0001-6021-747X"},"institutions":[{"id":"https://openalex.org/I71715416","display_name":"Universidade Federal do ABC","ror":"https://ror.org/028kg9j04","country_code":"BR","type":"education","lineage":["https://openalex.org/I71715416"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Raphael Y. Camargo","raw_affiliation_strings":["Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I71715416"]},{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil","institution_ids":["https://openalex.org/I71715416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091433891","display_name":"David Martins","orcid":"https://orcid.org/0000-0003-0398-8328"},"institutions":[{"id":"https://openalex.org/I71715416","display_name":"Universidade Federal do ABC","ror":"https://ror.org/028kg9j04","country_code":"BR","type":"education","lineage":["https://openalex.org/I71715416"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"David C. Martins","raw_affiliation_strings":["Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I71715416"]},{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil","institution_ids":["https://openalex.org/I71715416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026624658","display_name":"Beatriz Stransky","orcid":"https://orcid.org/0000-0003-4506-393X"},"institutions":[{"id":"https://openalex.org/I71715416","display_name":"Universidade Federal do ABC","ror":"https://ror.org/028kg9j04","country_code":"BR","type":"education","lineage":["https://openalex.org/I71715416"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Beatriz Stransky","raw_affiliation_strings":["Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I71715416"]},{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil","institution_ids":["https://openalex.org/I71715416"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032365814","display_name":"Luiz C. S. Rozante","orcid":"https://orcid.org/0000-0002-5472-6670"},"institutions":[{"id":"https://openalex.org/I71715416","display_name":"Universidade Federal do ABC","ror":"https://ror.org/028kg9j04","country_code":"BR","type":"education","lineage":["https://openalex.org/I71715416"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luiz C. S. Rozante","raw_affiliation_strings":["Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andre, Sao Paulo, Brazil","institution_ids":["https://openalex.org/I71715416"]},{"raw_affiliation_string":"Universidade Federal do ABC, Santo Andr\u00e9 \u2013 SP, Brazil","institution_ids":["https://openalex.org/I71715416"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5090014004"],"corresponding_institution_ids":["https://openalex.org/I71715416"],"apc_list":null,"apc_paid":null,"fwci":0.5369,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.64925221,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.8749445676803589},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.762714684009552},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6401271820068359},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.5451107025146484},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5396300554275513},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4727141559123993},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4550635814666748},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.4429517984390259},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3471229076385498},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34451645612716675},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32369840145111084},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.322889506816864},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.13019895553588867}],"concepts":[{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.8749445676803589},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.762714684009552},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6401271820068359},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.5451107025146484},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5396300554275513},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4727141559123993},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4550635814666748},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.4429517984390259},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3471229076385498},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34451645612716675},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32369840145111084},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.322889506816864},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.13019895553588867},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2012.6182628","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2012.6182628","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W126446084","https://openalex.org/W238668910","https://openalex.org/W1481919380","https://openalex.org/W1886215955","https://openalex.org/W1981509058","https://openalex.org/W2006931677","https://openalex.org/W2010888033","https://openalex.org/W2041905826","https://openalex.org/W2044525257","https://openalex.org/W2078899487","https://openalex.org/W2104862630","https://openalex.org/W2105291362","https://openalex.org/W2121695897","https://openalex.org/W2148850447","https://openalex.org/W2163296115","https://openalex.org/W2222445509","https://openalex.org/W3099289621","https://openalex.org/W4213387068","https://openalex.org/W4239403073","https://openalex.org/W4388252848","https://openalex.org/W6609222773","https://openalex.org/W6628887588","https://openalex.org/W6670274809"],"related_works":["https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538","https://openalex.org/W2080146221","https://openalex.org/W2370314112","https://openalex.org/W1912958759","https://openalex.org/W2792081825"],"abstract_inverted_index":{"Gene":[0],"regulatory":[1],"networks":[2],"(GRN)":[3],"inference":[4,140],"is":[5,40,59,68,74,85,106],"an":[6,130],"important":[7],"bioinformatics":[8],"problem":[9],"in":[10,76,129],"which":[11],"the":[12,53,60,64,86,120,143,163],"gene":[13,20,156,177],"interactions":[14],"need":[15],"to":[16,33],"be":[17,31,167],"deduced":[18],"from":[19],"expression":[21],"data,":[22],"such":[23],"as":[24,178],"microarray":[25],"data.":[26],"Feature":[27],"selection":[28,38],"methods":[29],"can":[30,166],"applied":[32,168],"this":[34,83],"problem.":[35],"A":[36],"feature":[37,66],"technique":[39],"composed":[41],"by":[42],"two":[43,158],"parts:":[44],"a":[45,49,89,102,107,113,135],"search":[46,54,62,100],"algorithm":[47,137],"and":[48,145],"criterion":[50],"function.":[51],"Among":[52],"algorithms":[55],"already":[56],"proposed,":[57],"there":[58],"exhaustive":[61,99],"where":[63],"best":[65],"subset":[67],"returned,":[69],"although":[70],"its":[71],"computational":[72],"complexity":[73],"unfeasible":[75],"almost":[77],"all":[78],"situations.":[79],"The":[80,160],"objective":[81],"of":[82,88],"work":[84],"development":[87],"low":[90],"cost":[91],"parallel":[92,110,115,136],"solution":[93],"based":[94,141],"on":[95,142],"GPU":[96],"architectures":[97],"for":[98,138,174],"with":[101,112],"viable":[103],"cost-benefit.":[104],"CUDA\u2122":[105],"general":[108],"purpose":[109],"architecture":[111],"new":[114],"programming":[116],"model":[117],"allowing":[118],"that":[119,153],"NVIDIA":[121],"<sup":[122],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[123],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">\u00ae</sup>":[124],"GPUs":[125],"solve":[126],"complex":[127],"problems":[128],"efficient":[131],"way.":[132],"We":[133],"developed":[134],"GRN":[139],"GPU/CUDA":[144],"encouraging":[146],"speedups":[147],"(60x)":[148],"were":[149],"achieved":[150],"when":[151],"assuming":[152],"each":[154,175],"target":[155,176],"has":[157],"predictors.":[159],"idea":[161],"behind":[162],"proposed":[164],"method":[165],"considering":[169],"three":[170],"or":[171],"more":[172],"predictors":[173],"well.":[179]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-25T13:04:00.132906","created_date":"2025-10-10T00:00:00"}
