{"id":"https://openalex.org/W2050758824","doi":"https://doi.org/10.1109/iccabs.2012.6182627","title":"PMS6: A fast algorithm for motif discovery","display_name":"PMS6: A fast algorithm for motif discovery","publication_year":2012,"publication_date":"2012-02-01","ids":{"openalex":"https://openalex.org/W2050758824","doi":"https://doi.org/10.1109/iccabs.2012.6182627","mag":"2050758824","pmid":"https://pubmed.ncbi.nlm.nih.gov/23959399"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2012.6182627","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2012.6182627","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3744182","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009025370","display_name":"Shibdas Bandyopadhyay","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shibdas Bandyopadhyay","raw_affiliation_strings":["Department of CISE, University of Florida, Gainesville, FL 32611","Dept. of CISE, University of Florida, Gainesville, 32611, USA"],"affiliations":[{"raw_affiliation_string":"Department of CISE, University of Florida, Gainesville, FL 32611","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Dept. of CISE, University of Florida, Gainesville, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070824596","display_name":"Sartaj Sahni","orcid":"https://orcid.org/0000-0002-8129-1676"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sartaj Sahni","raw_affiliation_strings":["Department of CISE, University of Florida, Gainesville, FL, USA","Dept. of CISE, University of Florida, Gainesville, 32611, USA"],"affiliations":[{"raw_affiliation_string":"Department of CISE, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Dept. of CISE, University of Florida, Gainesville, 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034177039","display_name":"Sanguthevar Rajasekaran","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanguthevar Rajasekaran","raw_affiliation_strings":["Department of CSE, University of Connecticut, Storrs, CT, USA","Department of CSE, University of Connecticut, Storrs, 06269, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of CSE, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Department of CSE, University of Connecticut, Storrs, 06269, USA#TAB#","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5009025370"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":null,"apc_paid":null,"fwci":7.074,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.96846867,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9424999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.8090969324111938},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.6874539852142334},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6590527296066284},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5868195295333862},{"id":"https://openalex.org/keywords/running-time","display_name":"Running time","score":0.4244098961353302},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.42423728108406067},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3221118748188019},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25538864731788635},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24834346771240234},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07423087954521179}],"concepts":[{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.8090969324111938},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.6874539852142334},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6590527296066284},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5868195295333862},{"id":"https://openalex.org/C3017489831","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Running time","level":2,"score":0.4244098961353302},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.42423728108406067},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3221118748188019},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25538864731788635},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24834346771240234},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07423087954521179},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/iccabs.2012.6182627","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2012.6182627","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS)","raw_type":"proceedings-article"},{"id":"pmid:23959399","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23959399","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE ... International Conference on Computational Advances in Bio and Medical Sciences : [proceedings]. IEEE International Conference on Computational Advances in Bio and Medical Sciences","raw_type":null},{"id":"pmh:oai:europepmc.org:2736088","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3744182","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.696.1595","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.696.1595","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cise.ufl.edu/%7Esahni/papers/pms6.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3744182","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3744182","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Int Conf Comput Adv Bio Med Sci","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:3744182","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3744182","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Int Conf Comput Adv Bio Med Sci","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310017","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97"},{"id":"https://openalex.org/F4320323155","display_name":"Chinese Academy of Agricultural Sciences","ror":"https://ror.org/0313jb750"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1486659038","https://openalex.org/W1518105754","https://openalex.org/W1571755427","https://openalex.org/W1580213736","https://openalex.org/W1863405838","https://openalex.org/W1998300401","https://openalex.org/W2003967338","https://openalex.org/W2023863508","https://openalex.org/W2024349287","https://openalex.org/W2025567828","https://openalex.org/W2028904582","https://openalex.org/W2038555630","https://openalex.org/W2041754606","https://openalex.org/W2054984882","https://openalex.org/W2062088872","https://openalex.org/W2070310544","https://openalex.org/W2089026820","https://openalex.org/W2106304690","https://openalex.org/W2115273783","https://openalex.org/W2128091972","https://openalex.org/W2145091349","https://openalex.org/W2155976638","https://openalex.org/W2162114340","https://openalex.org/W2162665632","https://openalex.org/W6628970866","https://openalex.org/W6630895896","https://openalex.org/W6634719314","https://openalex.org/W6657664104","https://openalex.org/W6675827505","https://openalex.org/W6683997334"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2368037387","https://openalex.org/W190186656","https://openalex.org/W2902352756","https://openalex.org/W2377079823","https://openalex.org/W2605676258","https://openalex.org/W2599962286","https://openalex.org/W2319582300","https://openalex.org/W2941021630"],"abstract_inverted_index":{"We":[0],"propose":[1],"a":[2,29,60,70],"new":[3],"algorithm,":[4],"PMS6,":[5],"for":[6,52,64,74,91,99,101,120,128],"the":[7,47,65,75,110],"(<i>l</i>,":[8],"<i>d</i>)-motif":[9],"discovery":[10,54],"problem":[11],"in":[12,25,55],"which":[13],"we":[14],"are":[15],"to":[16,69],"find":[17],"all":[18],"strings":[19,33],"of":[20,28,32,62,72,86],"length":[21],"<i>l</i>":[22],"that":[23,98],"appear":[24],"every":[26],"string":[27],"given":[30],"set":[31],"with":[34],"at":[35],"most":[36],"<i>d</i>":[37],"mismatches.":[38],"The":[39,88],"run":[40,111],"time":[41,90,106,112],"ratio":[42,113],"PMS5/PMS6,":[43],"where":[44],"PMS5":[45,80,100],"is":[46,93,107,115],"fastest":[48],"previously":[49],"known":[50],"algorithm":[51],"motif":[53],"large":[56],"instances,":[57],"ranges":[58],"from":[59],"high":[61,117],"2.20":[63],"(21,8)":[66],"challenge":[67,77],"instances":[68,122],"low":[71,125],"1.69":[73],"(17,6)":[76,129],"instances.":[78,103,130],"Both":[79],"and":[81,123],"PMS6":[82,92],"require":[83],"some":[84],"amount":[85],"preprocessing.":[87],"preprocessing":[89,105],"34":[94],"times":[95],"faster":[96],"than":[97],"(23,9)":[102],"When":[104],"factored":[108],"in,":[109],"PMS5/PMS6":[114],"as":[116,118,124,126],"2.75":[119],"(13,4)":[121],"1.95":[127]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
