{"id":"https://openalex.org/W2166597747","doi":"https://doi.org/10.1109/iccabs.2011.5729902","title":"Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications","display_name":"Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications","publication_year":2011,"publication_date":"2011-02-01","ids":{"openalex":"https://openalex.org/W2166597747","doi":"https://doi.org/10.1109/iccabs.2011.5729902","mag":"2166597747"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2011.5729902","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2011.5729902","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089727775","display_name":"Simon Kocbek","orcid":null},"institutions":[{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["SI"],"is_corresponding":true,"raw_author_name":"Simon Kocbek","raw_affiliation_strings":["Faculty of Health Sciences, University of Maribor, Maribor, Slovenia"],"affiliations":[{"raw_affiliation_string":"Faculty of Health Sciences, University of Maribor, Maribor, Slovenia","institution_ids":["https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079878875","display_name":"Rune Setre","orcid":null},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Rune Setre","raw_affiliation_strings":["Tokyo Daigaku, Bunkyo-ku, Tokyo, JP"],"affiliations":[{"raw_affiliation_string":"Tokyo Daigaku, Bunkyo-ku, Tokyo, JP","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017783286","display_name":"Gregor \u0160tiglic","orcid":"https://orcid.org/0000-0002-0183-8679"},"institutions":[{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Gregor Stiglic","raw_affiliation_strings":["Faculty of Health Sciences, University of Maribor, Maribor, Slovenia"],"affiliations":[{"raw_affiliation_string":"Faculty of Health Sciences, University of Maribor, Maribor, Slovenia","institution_ids":["https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063923711","display_name":"Jin-Dong Kim","orcid":"https://orcid.org/0000-0001-9660-6303"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jin-Dong Kim","raw_affiliation_strings":["Dep. of Computer Science, University of Tokyo, Tokyo, Japan","Department of Computer Science, University of Tokyo, Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"Dep. of Computer Science, University of Tokyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I161296585"]},{"raw_affiliation_string":"Department of Computer Science, University of Tokyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078285925","display_name":"Igor Pernek","orcid":"https://orcid.org/0000-0003-4637-2814"},"institutions":[{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Igor Pernek","raw_affiliation_strings":["Faculty of Health Sciences, University of Maribor, Maribor, Slovenia"],"affiliations":[{"raw_affiliation_string":"Faculty of Health Sciences, University of Maribor, Maribor, Slovenia","institution_ids":["https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064113904","display_name":"Yoshimasa Tsuruoka","orcid":"https://orcid.org/0000-0002-0707-1077"},"institutions":[{"id":"https://openalex.org/I177738480","display_name":"Japan Advanced Institute of Science and Technology","ror":"https://ror.org/03frj4r98","country_code":"JP","type":"education","lineage":["https://openalex.org/I177738480"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshimasa Tsuruoka","raw_affiliation_strings":["School of Information Science, JAIST, Japan"],"affiliations":[{"raw_affiliation_string":"School of Information Science, JAIST, Japan","institution_ids":["https://openalex.org/I177738480"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021268380","display_name":"Peter Kokol","orcid":"https://orcid.org/0000-0001-9102-9359"},"institutions":[{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Peter Kokol","raw_affiliation_strings":["Faculty of Health Sciences, University of Maribor, Maribor, Slovenia"],"affiliations":[{"raw_affiliation_string":"Faculty of Health Sciences, University of Maribor, Maribor, Slovenia","institution_ids":["https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["National Centrefor Text Mining (NaCTeM), Manchester, UK"],"affiliations":[{"raw_affiliation_string":"National Centrefor Text Mining (NaCTeM), Manchester, UK","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112241147","display_name":"Jun\u2019ichi Tsujii","orcid":null},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jun'ichi Tsujii","raw_affiliation_strings":["Dep. of Computer Science, University of Tokyo, Tokyo, Japan","Department of Computer Science, University of Tokyo, Tokyo, Japan","National Centrefor Text Mining (NaCTeM), Manchester, UK"],"affiliations":[{"raw_affiliation_string":"Dep. of Computer Science, University of Tokyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974","https://openalex.org/I161296585"]},{"raw_affiliation_string":"Department of Computer Science, University of Tokyo, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"National Centrefor Text Mining (NaCTeM), Manchester, UK","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5089727775"],"corresponding_institution_ids":["https://openalex.org/I37696226"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13195164,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"7","issue":null,"first_page":"249","last_page":"249"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6769006848335266},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6342869997024536},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45132508873939514},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4467499852180481},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4164019227027893},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3580419421195984},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3237662613391876},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13311678171157837}],"concepts":[{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6769006848335266},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6342869997024536},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45132508873939514},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4467499852180481},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4164019227027893},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3580419421195984},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3237662613391876},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13311678171157837}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iccabs.2011.5729902","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2011.5729902","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5099999904632568}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322832","display_name":"University of Tokyo","ror":"https://ror.org/057zh3y96"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W2097554668","https://openalex.org/W2112134481","https://openalex.org/W2118190787","https://openalex.org/W2147558260"],"related_works":["https://openalex.org/W2118564381","https://openalex.org/W2163901716","https://openalex.org/W2152204162","https://openalex.org/W2739821120","https://openalex.org/W2088097596","https://openalex.org/W2150136235","https://openalex.org/W2026095310","https://openalex.org/W2140661912","https://openalex.org/W2037724912","https://openalex.org/W2056806613"],"abstract_inverted_index":{"DNA":[0],"microarray":[1],"is":[2,44,68,149],"a":[3,17,47,111,181],"technology":[4],"that":[5],"can":[6,58,126],"simultaneously":[7],"measure":[8],"the":[9,21,37,42,69,78,81,144,177],"expression":[10,32],"levels":[11],"of":[12,14,36,80,107,133],"thousands":[13],"genes":[15,24,43],"in":[16,176],"single":[18],"experiment.":[19],"Often,":[20],"most":[22],"informative":[23],"have":[25],"to":[26,40,45,76],"be":[27,59],"selected":[28],"from":[29,136],"different":[30,72,128],"gene":[31,83],"level":[33],"datasets.":[34],"One":[35],"possible":[38],"ways":[39],"rank":[41],"use":[46],"feature":[48],"selection":[49],"(FS)":[50],"method.":[51],"There":[52],"are":[53],"many":[54],"FS":[55,96,129],"methods":[56,73,88,97,130],"which":[57,66,93,148,174],"used,":[60],"but":[61],"how":[62,95],"do":[63],"researches":[64],"know":[65,94],"one":[67],"best?":[70],"Several":[71],"were":[74],"proposed":[75],"estimate":[77],"\u201cgoodness\u201d":[79],"ranked":[82],"lists":[84],"[2\u20134].":[85],"However,":[86],"these":[87],"usually":[89],"require":[90],"computer":[91,124],"experts":[92,118],"and":[98,116,158,171],"learning":[99],"algorithms":[100],"work.":[101],"Therefore":[102],"we":[103],"propose":[104],"AGRA":[105,142],"(Analysis":[106],"Gene":[108],"Ranking":[109],"Algorithms),":[110],"novel":[112],"method":[113],"where":[114],"biologists":[115],"other":[117],"with":[119,131],"low":[120],"or":[121],"no":[122],"previous":[123],"knowledge":[125],"compare":[127],"help":[132],"evidence":[134],"mined":[135],"PubMed":[137],"publications.":[138],"To":[139],"achieve":[140],"this,":[141],"uses":[143],"FACTA+":[145],"[1]":[146],"system":[147],"an":[150],"online":[151],"text":[152],"search":[153,182],"engine":[154],"for":[155],"MEDLINE":[156],"abstracts":[157],"it":[159],"helps":[160],"users":[161],"browse":[162],"biomedical":[163],"concepts":[164],"(e.g.":[165],"genes/proteins,":[166],"diseases,":[167],"symptoms,":[168],"drugs,":[169],"enzymes":[170],"chemical":[172],"compounds)":[173],"co-occur":[175],"documents":[178],"retrieved":[179],"by":[180],"query.":[183]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
