{"id":"https://openalex.org/W2098029862","doi":"https://doi.org/10.1109/iccabs.2011.5729873","title":"An improved maximum likelihood formulation for accurate genome assembly","display_name":"An improved maximum likelihood formulation for accurate genome assembly","publication_year":2011,"publication_date":"2011-02-01","ids":{"openalex":"https://openalex.org/W2098029862","doi":"https://doi.org/10.1109/iccabs.2011.5729873","mag":"2098029862"},"language":"en","primary_location":{"id":"doi:10.1109/iccabs.2011.5729873","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2011.5729873","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108275295","display_name":"Aditya Varma","orcid":null},"institutions":[{"id":"https://openalex.org/I162827531","display_name":"Indian Institute of Technology Bombay","ror":"https://ror.org/02qyf5152","country_code":"IN","type":"education","lineage":["https://openalex.org/I162827531"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Aditya Varma","raw_affiliation_strings":["Department of Computer Science and Engineering, Indian Institute of Technology Bombay, Mumbai, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Indian Institute of Technology Bombay, Mumbai, India","institution_ids":["https://openalex.org/I162827531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023011448","display_name":"Abhiram Ranade","orcid":"https://orcid.org/0000-0001-8350-0438"},"institutions":[{"id":"https://openalex.org/I162827531","display_name":"Indian Institute of Technology Bombay","ror":"https://ror.org/02qyf5152","country_code":"IN","type":"education","lineage":["https://openalex.org/I162827531"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Abhiram Ranade","raw_affiliation_strings":["Department of Computer Science and Engineering, Indian Institute of Technology Bombay, Mumbai, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Indian Institute of Technology Bombay, Mumbai, India","institution_ids":["https://openalex.org/I162827531"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074347913","display_name":"Srinivas Aluru","orcid":"https://orcid.org/0000-0003-4279-469X"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]},{"id":"https://openalex.org/I162827531","display_name":"Indian Institute of Technology Bombay","ror":"https://ror.org/02qyf5152","country_code":"IN","type":"education","lineage":["https://openalex.org/I162827531"]}],"countries":["IN","US"],"is_corresponding":false,"raw_author_name":"Srinivas Aluru","raw_affiliation_strings":["Department of Computer Science and Engineering, Indian Institute of Technology Bombay, Mumbai, India","Department of Electrical and Computer Engineering, Iowa State University, Ames, IA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Indian Institute of Technology Bombay, Mumbai, India","institution_ids":["https://openalex.org/I162827531"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Iowa State University, Ames, IA, USA","institution_ids":["https://openalex.org/I173911158"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5108275295"],"corresponding_institution_ids":["https://openalex.org/I162827531"],"apc_list":null,"apc_paid":null,"fwci":0.667,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.69197893,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"5462","issue":null,"first_page":"165","last_page":"170"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5701826810836792},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5685245990753174},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5592235326766968},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.5549248456954956},{"id":"https://openalex.org/keywords/minification","display_name":"Minification","score":0.548470139503479},{"id":"https://openalex.org/keywords/convexity","display_name":"Convexity","score":0.5244386792182922},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.5163534879684448},{"id":"https://openalex.org/keywords/maximum-likelihood","display_name":"Maximum likelihood","score":0.5094385743141174},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5057713985443115},{"id":"https://openalex.org/keywords/convex-optimization","display_name":"Convex optimization","score":0.42349785566329956},{"id":"https://openalex.org/keywords/maximum-a-posteriori-estimation","display_name":"Maximum a posteriori estimation","score":0.42209166288375854},{"id":"https://openalex.org/keywords/regular-polygon","display_name":"Regular polygon","score":0.4129566550254822},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4118332862854004},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3087722957134247},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.19583484530448914},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1443142592906952},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11824232339859009},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08953624963760376}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5701826810836792},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5685245990753174},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5592235326766968},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.5549248456954956},{"id":"https://openalex.org/C147764199","wikidata":"https://www.wikidata.org/wiki/Q6865248","display_name":"Minification","level":2,"score":0.548470139503479},{"id":"https://openalex.org/C72134830","wikidata":"https://www.wikidata.org/wiki/Q5166524","display_name":"Convexity","level":2,"score":0.5244386792182922},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.5163534879684448},{"id":"https://openalex.org/C49781872","wikidata":"https://www.wikidata.org/wiki/Q1045555","display_name":"Maximum likelihood","level":2,"score":0.5094385743141174},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5057713985443115},{"id":"https://openalex.org/C157972887","wikidata":"https://www.wikidata.org/wiki/Q463359","display_name":"Convex optimization","level":3,"score":0.42349785566329956},{"id":"https://openalex.org/C9810830","wikidata":"https://www.wikidata.org/wiki/Q635384","display_name":"Maximum a posteriori estimation","level":3,"score":0.42209166288375854},{"id":"https://openalex.org/C112680207","wikidata":"https://www.wikidata.org/wiki/Q714886","display_name":"Regular polygon","level":2,"score":0.4129566550254822},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4118332862854004},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3087722957134247},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.19583484530448914},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1443142592906952},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11824232339859009},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08953624963760376},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C106159729","wikidata":"https://www.wikidata.org/wiki/Q2294553","display_name":"Financial economics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/iccabs.2011.5729873","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iccabs.2011.5729873","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS)","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.222.346","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.222.346","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.iitb.ac.in/%7Eranade/GraphAssembly.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320719","display_name":"Department of Science and Technology, Ministry of Science and Technology, India","ror":"https://ror.org/0101xrq71"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1498892184","https://openalex.org/W1572970249","https://openalex.org/W1635391495","https://openalex.org/W1966822396","https://openalex.org/W1984021931","https://openalex.org/W2022910024","https://openalex.org/W2035596374","https://openalex.org/W2119745866","https://openalex.org/W2136651963","https://openalex.org/W2139518905","https://openalex.org/W2141217788","https://openalex.org/W2142749416","https://openalex.org/W2144662851","https://openalex.org/W2145186656","https://openalex.org/W2151017710","https://openalex.org/W2155011418","https://openalex.org/W2156104322","https://openalex.org/W2159497035","https://openalex.org/W2160969485","https://openalex.org/W2161546116","https://openalex.org/W2161668137","https://openalex.org/W2166265186","https://openalex.org/W2584945553","https://openalex.org/W2952664587","https://openalex.org/W6634272996"],"related_works":["https://openalex.org/W1503532423","https://openalex.org/W1967494390","https://openalex.org/W3013496002","https://openalex.org/W2465363361","https://openalex.org/W2896820906","https://openalex.org/W2101542441","https://openalex.org/W4284711868","https://openalex.org/W2283950057","https://openalex.org/W1906819494","https://openalex.org/W1965111750"],"abstract_inverted_index":{"We":[0,13,44],"present":[1],"improvements":[2],"to":[3,48,64,69],"the":[4,15,25,46,56,59,62,71,79,82,91,95,128],"recently":[5],"proposed":[6],"maximum":[7,123],"likelihood":[8,124],"method":[9,29,101],"for":[10,94],"genome":[11,60,125,136],"assembly.":[12],"formulate":[14],"problem":[16],"as":[17],"one":[18],"of":[19,41,55,58,106,122,130],"direct":[20],"convex":[21],"optimization,":[22],"and":[23,36,109,112,127],"achieve":[24],"following":[26],"improvements:":[27],"Our":[28],"does":[30],"not":[31],"require":[32],"identical":[33],"read":[34],"lengths":[35],"can":[37,102],"deal":[38],"with":[39],"reads":[40],"varying":[42],"lengths.":[43],"eliminate":[45],"requirement":[47],"a":[49,52,86,119],"priori":[50],"know":[51],"stringent":[53],"estimate":[54,84],"length":[57,83],"or":[61],"need":[63],"use":[65],"further":[66,120],"expectation":[67],"minimization":[68],"predict":[70],"most":[72],"likely":[73],"length.":[74],"Instead,":[75],"we":[76],"explicitly":[77],"incorporate":[78],"uncertainty":[80],"in":[81,133],"by":[85],"range":[87],"parameter":[88],"without":[89],"affecting":[90],"convexity":[92],"required":[93],"optimization.":[96],"Results":[97],"indicate":[98],"that":[99],"our":[100],"generate":[103],"accurate":[104],"estimates":[105],"repeat":[107],"counts":[108],"produces":[110],"fewer":[111],"much":[113],"longer":[114],"contigs.":[115],"These":[116],"results":[117],"mark":[118],"advancement":[121],"assembly":[126],"potential":[129],"this":[131],"approach":[132],"building":[134],"future":[135],"assemblers.":[137]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
