{"id":"https://openalex.org/W4387869989","doi":"https://doi.org/10.1109/icc45041.2023.10278566","title":"Stochastic Modeling of Biofilm Formation with Bacterial Quorum Sensing","display_name":"Stochastic Modeling of Biofilm Formation with Bacterial Quorum Sensing","publication_year":2023,"publication_date":"2023-05-28","ids":{"openalex":"https://openalex.org/W4387869989","doi":"https://doi.org/10.1109/icc45041.2023.10278566"},"language":"en","primary_location":{"id":"doi:10.1109/icc45041.2023.10278566","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icc45041.2023.10278566","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICC 2023 - IEEE International Conference on Communications","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001430420","display_name":"Fatih G\u00fcle\u00e7","orcid":"https://orcid.org/0000-0003-1031-6108"},"institutions":[{"id":"https://openalex.org/I192455969","display_name":"York University","ror":"https://ror.org/05fq50484","country_code":"CA","type":"education","lineage":["https://openalex.org/I192455969"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Fatih Gulec","raw_affiliation_strings":["York University,Department of Electrical Engineering and Computer Science,Toronto,Ontario,Canada","Department of Electrical Engineering and Computer Science, York University, Toronto, Ontario, Canada"],"affiliations":[{"raw_affiliation_string":"York University,Department of Electrical Engineering and Computer Science,Toronto,Ontario,Canada","institution_ids":["https://openalex.org/I192455969"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, York University, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I192455969"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046532019","display_name":"Andrew W. Eckford","orcid":"https://orcid.org/0000-0002-9808-1229"},"institutions":[{"id":"https://openalex.org/I192455969","display_name":"York University","ror":"https://ror.org/05fq50484","country_code":"CA","type":"education","lineage":["https://openalex.org/I192455969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew W. Eckford","raw_affiliation_strings":["York University,Department of Electrical Engineering and Computer Science,Toronto,Ontario,Canada","Department of Electrical Engineering and Computer Science, York University, Toronto, Ontario, Canada"],"affiliations":[{"raw_affiliation_string":"York University,Department of Electrical Engineering and Computer Science,Toronto,Ontario,Canada","institution_ids":["https://openalex.org/I192455969"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, York University, Toronto, Ontario, Canada","institution_ids":["https://openalex.org/I192455969"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001430420"],"corresponding_institution_ids":["https://openalex.org/I192455969"],"apc_list":null,"apc_paid":null,"fwci":0.6362,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.71181872,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"4470","last_page":"4475"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11407","display_name":"Innovative Microfluidic and Catalytic Techniques Innovation","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biofilm","display_name":"Biofilm","score":0.9610147476196289},{"id":"https://openalex.org/keywords/quorum-sensing","display_name":"Quorum sensing","score":0.9436314702033997},{"id":"https://openalex.org/keywords/autoinducer","display_name":"Autoinducer","score":0.9133853316307068},{"id":"https://openalex.org/keywords/pseudomonas-putida","display_name":"Pseudomonas putida","score":0.6691588163375854},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.6405267119407654},{"id":"https://openalex.org/keywords/pseudomonas-aeruginosa","display_name":"Pseudomonas aeruginosa","score":0.5606001019477844},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5485745668411255},{"id":"https://openalex.org/keywords/extracellular-polymeric-substance","display_name":"Extracellular polymeric substance","score":0.488956093788147},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.4855896830558777},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4486992061138153},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.34752437472343445},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25246089696884155},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07084047794342041}],"concepts":[{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.9610147476196289},{"id":"https://openalex.org/C118687296","wikidata":"https://www.wikidata.org/wiki/Q905754","display_name":"Quorum sensing","level":4,"score":0.9436314702033997},{"id":"https://openalex.org/C95282255","wikidata":"https://www.wikidata.org/wiki/Q4826353","display_name":"Autoinducer","level":5,"score":0.9133853316307068},{"id":"https://openalex.org/C2780543182","wikidata":"https://www.wikidata.org/wiki/Q2738168","display_name":"Pseudomonas putida","level":3,"score":0.6691588163375854},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.6405267119407654},{"id":"https://openalex.org/C2777637488","wikidata":"https://www.wikidata.org/wiki/Q31856","display_name":"Pseudomonas aeruginosa","level":3,"score":0.5606001019477844},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5485745668411255},{"id":"https://openalex.org/C129968341","wikidata":"https://www.wikidata.org/wiki/Q1385446","display_name":"Extracellular polymeric substance","level":4,"score":0.488956093788147},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.4855896830558777},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4486992061138153},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.34752437472343445},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25246089696884155},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07084047794342041},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icc45041.2023.10278566","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icc45041.2023.10278566","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICC 2023 - IEEE International Conference on Communications","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/6","display_name":"Clean water and sanitation","score":0.4399999976158142}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1989235468","https://openalex.org/W2011432832","https://openalex.org/W2024995147","https://openalex.org/W2028460556","https://openalex.org/W2041491587","https://openalex.org/W2059010035","https://openalex.org/W2061650968","https://openalex.org/W2117453669","https://openalex.org/W2131227051","https://openalex.org/W2167154952","https://openalex.org/W2214040477","https://openalex.org/W2508474324","https://openalex.org/W2520975117","https://openalex.org/W2739410635","https://openalex.org/W2795760520","https://openalex.org/W2891978290","https://openalex.org/W2931314706","https://openalex.org/W2971834731","https://openalex.org/W2985499145","https://openalex.org/W3174843399","https://openalex.org/W3199469962","https://openalex.org/W4206188667","https://openalex.org/W4226401760","https://openalex.org/W4251055834"],"related_works":["https://openalex.org/W2374713756","https://openalex.org/W2024534479","https://openalex.org/W1993616876","https://openalex.org/W3217262645","https://openalex.org/W1983200428","https://openalex.org/W2126922170","https://openalex.org/W3029497197","https://openalex.org/W2059979846","https://openalex.org/W2081524758","https://openalex.org/W2030459802"],"abstract_inverted_index":{"Bacteria":[0],"generally":[1],"live":[2],"in":[3,31,63,128,137,163],"complicated":[4],"structures":[5],"called":[6],"biofilms,":[7],"consisting":[8],"of":[9,79,109,126,166],"communicating":[10],"bacterial":[11,53,76],"colonies":[12],"and":[13,81,83,116],"extracellular":[14],"polymeric":[15],"substance":[16],"(EPS).":[17],"Since":[18],"biofilms":[19],"are":[20,67],"related":[21],"to":[22,37],"detrimental":[23],"effects":[24],"such":[25],"as":[26,69],"infection":[27],"or":[28],"antibiotic":[29],"resistance":[30],"different":[32],"settings,":[33],"it":[34,140],"is":[35,47,92,102,120,144],"essential":[36],"model":[38,46],"their":[39,84],"formation.":[40],"In":[41,57],"this":[42,58],"paper,":[43],"a":[44,70],"stochastic":[45,164],"proposed":[48],"for":[49,114],"biofilm":[50,65,130,152],"formation,":[51],"using":[52,105,159],"quorum":[54],"sensing":[55],"(QS).":[56],"model,":[59],"the":[60,64,96,106,124,129,134,151,160],"biological":[61],"processes":[62],"formation":[66],"modeled":[68,156],"chemical":[71,167],"reaction":[72],"network":[73],"which":[74],"includes":[75],"reproduction,":[77],"productions":[78],"autoinducer":[80,115],"EPS,":[82],"diffusion.":[85],"The":[86,146],"modified":[87],"explicit":[88],"tau-leap":[89],"simulation":[90],"algorithm":[91],"adapted":[93],"based":[94],"on":[95],"two-state":[97],"QS":[98,143,161],"mechanism.":[99],"Our":[100],"approach":[101],"validated":[103],"by":[104,158],"experimental":[107],"results":[108],"Pseudomonas":[110],"putida":[111],"IsoF":[112],"bacteria":[113,117],"concentration.":[118],"It":[119],"also":[121],"shown":[122],"that":[123],"percentage":[125],"EPS":[127],"increases":[131],"significantly":[132],"after":[133],"state":[135],"change":[136],"QS,":[138],"while":[139],"decreases":[141],"before":[142],"activated.":[145],"presented":[147],"work":[148],"shows":[149],"how":[150],"growth":[153],"can":[154],"be":[155],"realistically":[157],"mechanism":[162],"simulations":[165],"reactions.":[168]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
