{"id":"https://openalex.org/W4402816181","doi":"https://doi.org/10.1109/icassp49660.2025.10890269","title":"Hyperedge Representations with Hypergraph Wavelets: Applications to Spatial Transcriptomics","display_name":"Hyperedge Representations with Hypergraph Wavelets: Applications to Spatial Transcriptomics","publication_year":2025,"publication_date":"2025-03-12","ids":{"openalex":"https://openalex.org/W4402816181","doi":"https://doi.org/10.1109/icassp49660.2025.10890269","pmid":"https://pubmed.ncbi.nlm.nih.gov/39314512"},"language":"en","primary_location":{"id":"doi:10.1109/icassp49660.2025.10890269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp49660.2025.10890269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICASSP 2025 - 2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2409.09469","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103023396","display_name":"Xingzhi Sun","orcid":"https://orcid.org/0000-0002-8540-5722"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xingzhi Sun","raw_affiliation_strings":["Yale University"],"affiliations":[{"raw_affiliation_string":"Yale University","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109788709","display_name":"Charles Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Xu","raw_affiliation_strings":["Yale University"],"affiliations":[{"raw_affiliation_string":"Yale University","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113400315","display_name":"Jo\u00e3o F. Rocha","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o F. Rocha","raw_affiliation_strings":["Yale University"],"affiliations":[{"raw_affiliation_string":"Yale University","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100322145","display_name":"Chen Liu","orcid":"https://orcid.org/0000-0002-1726-4294"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chen Liu","raw_affiliation_strings":["Yale University"],"affiliations":[{"raw_affiliation_string":"Yale University","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093136115","display_name":"Benjamin Hollander-Bodie","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Hollander-Bodie","raw_affiliation_strings":["Yale University"],"affiliations":[{"raw_affiliation_string":"Yale University","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114094467","display_name":"Laney Goldman","orcid":null},"institutions":[{"id":"https://openalex.org/I133543626","display_name":"Harvey Mudd College","ror":"https://ror.org/025ecfn45","country_code":"US","type":"education","lineage":["https://openalex.org/I133543626"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laney Goldman","raw_affiliation_strings":["Harvey Mudd College"],"affiliations":[{"raw_affiliation_string":"Harvey Mudd College","institution_ids":["https://openalex.org/I133543626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034628190","display_name":"Marcello DiStasio","orcid":"https://orcid.org/0000-0001-6588-0713"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcello DiStasio","raw_affiliation_strings":["Yale University"],"affiliations":[{"raw_affiliation_string":"Yale University","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072641931","display_name":"Michael Perlmutter","orcid":"https://orcid.org/0000-0001-9829-4016"},"institutions":[{"id":"https://openalex.org/I120156002","display_name":"Boise State University","ror":"https://ror.org/02e3zdp86","country_code":"US","type":"education","lineage":["https://openalex.org/I120156002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Perlmutter","raw_affiliation_strings":["Boise State University"],"affiliations":[{"raw_affiliation_string":"Boise State University","institution_ids":["https://openalex.org/I120156002"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045475274","display_name":"Smita Krishnaswamy","orcid":"https://orcid.org/0000-0001-5823-1985"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Smita Krishnaswamy","raw_affiliation_strings":["Yale University"],"affiliations":[{"raw_affiliation_string":"Yale University","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5103023396"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":null,"apc_paid":null,"fwci":0.8425,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.68721797,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.9315184354782104},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.650726318359375},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5700153112411499},{"id":"https://openalex.org/keywords/wavelet","display_name":"Wavelet","score":0.5690913200378418},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35562604665756226},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19020050764083862},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.0944642722606659}],"concepts":[{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.9315184354782104},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.650726318359375},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5700153112411499},{"id":"https://openalex.org/C47432892","wikidata":"https://www.wikidata.org/wiki/Q831390","display_name":"Wavelet","level":2,"score":0.5690913200378418},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35562604665756226},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19020050764083862},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0944642722606659}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/icassp49660.2025.10890269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp49660.2025.10890269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICASSP 2025 - 2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"},{"id":"pmid:39314512","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39314512","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ArXiv","raw_type":null},{"id":"pmh:oai:arXiv.org:2409.09469","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2409.09469","pdf_url":"https://arxiv.org/pdf/2409.09469","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:11419178","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11419178","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11419178/pdf/nihpp-2409.09469v1.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ArXiv","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2409.09469","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2409.09469","pdf_url":"https://arxiv.org/pdf/2409.09469","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5365530260","display_name":null,"funder_award_id":"R01GM135929","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5644249516","display_name":null,"funder_award_id":"2242769","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7666845552","display_name":null,"funder_award_id":"R01GM130847","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8696453412","display_name":null,"funder_award_id":"2047856","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G907619861","display_name":null,"funder_award_id":"20478","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320338440","display_name":"HORIZON EUROPE Health","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402816181.pdf","grobid_xml":"https://content.openalex.org/works/W4402816181.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W2090891622","https://openalex.org/W2120087768","https://openalex.org/W2154851992","https://openalex.org/W2156718197","https://openalex.org/W2170057991","https://openalex.org/W2471536144","https://openalex.org/W2794480084","https://openalex.org/W2892880750","https://openalex.org/W2907514116","https://openalex.org/W2962756421","https://openalex.org/W2963414755","https://openalex.org/W2993894543","https://openalex.org/W3036882247","https://openalex.org/W3085990079","https://openalex.org/W3182041383","https://openalex.org/W3190202966","https://openalex.org/W4206255050","https://openalex.org/W4210583065","https://openalex.org/W4210770595","https://openalex.org/W4220765701","https://openalex.org/W4230962939","https://openalex.org/W4231449374","https://openalex.org/W4283704002","https://openalex.org/W4297243391","https://openalex.org/W4303443407","https://openalex.org/W4306194402","https://openalex.org/W4308770506","https://openalex.org/W4312138287","https://openalex.org/W4322738920","https://openalex.org/W4388997570","https://openalex.org/W4392874417","https://openalex.org/W4392931697","https://openalex.org/W4393406722","https://openalex.org/W4401376833","https://openalex.org/W4402021167","https://openalex.org/W4403401644","https://openalex.org/W6681029592","https://openalex.org/W6726873649","https://openalex.org/W6738964360","https://openalex.org/W6758327135","https://openalex.org/W6838289576"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4376608589","https://openalex.org/W1537073411","https://openalex.org/W1948107826","https://openalex.org/W3138003926","https://openalex.org/W1630514295","https://openalex.org/W4300037846","https://openalex.org/W4288275998"],"abstract_inverted_index":{"In":[0,39],"many":[1],"data-driven":[2],"applications,":[3],"higher-order":[4,37],"relationships":[5],"among":[6],"multiple":[7],"objects":[8],"are":[9],"essential":[10],"in":[11,62],"capturing":[12],"complex":[13],"interactions.":[14],"Hypergraphs,":[15],"which":[16],"generalize":[17],"graphs":[18],"by":[19,66],"allowing":[20],"edges":[21],"to":[22,70],"connect":[23],"any":[24],"number":[25],"of":[26],"nodes,":[27],"provide":[28],"a":[29],"flexible":[30],"and":[31,47,52],"powerful":[32],"framework":[33],"for":[34,59,75],"modeling":[35],"such":[36],"relationships.":[38],"this":[40],"work,":[41],"we":[42],"introduce":[43],"hypergraph":[44],"diffusion":[45],"wavelets":[46],"describe":[48],"their":[49,57],"favorable":[50],"spectral":[51],"spatial":[53],"properties.":[54],"We":[55],"demonstrate":[56],"utility":[58],"biomedical":[60],"discovery":[61],"spatially":[63],"resolved":[64],"transcriptomics":[65],"applying":[67],"the":[68],"method":[69],"represent":[71],"disease-relevant":[72],"cellular":[73],"niches":[74],"Alzheimer's":[76],"disease.":[77]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
