{"id":"https://openalex.org/W4408347307","doi":"https://doi.org/10.1109/icassp49660.2025.10890074","title":"Hyperbolic PHATE: Visualizing Continuous Hierarchy of Latent Differentiation Structures","display_name":"Hyperbolic PHATE: Visualizing Continuous Hierarchy of Latent Differentiation Structures","publication_year":2025,"publication_date":"2025-03-12","ids":{"openalex":"https://openalex.org/W4408347307","doi":"https://doi.org/10.1109/icassp49660.2025.10890074"},"language":"en","primary_location":{"id":"doi:10.1109/icassp49660.2025.10890074","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp49660.2025.10890074","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICASSP 2025 - 2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103244481","display_name":"Masahiro Nakano","orcid":"https://orcid.org/0009-0008-9378-0099"},"institutions":[{"id":"https://openalex.org/I2251713219","display_name":"NTT (Japan)","ror":"https://ror.org/00berct97","country_code":"JP","type":"company","lineage":["https://openalex.org/I2251713219"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masahiro Nakano","raw_affiliation_strings":["NTT Corporation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NTT Corporation","institution_ids":["https://openalex.org/I2251713219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054789542","display_name":"Hiroki Sakuma","orcid":"https://orcid.org/0000-0002-9197-1333"},"institutions":[{"id":"https://openalex.org/I2251713219","display_name":"NTT (Japan)","ror":"https://ror.org/00berct97","country_code":"JP","type":"company","lineage":["https://openalex.org/I2251713219"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroki Sakuma","raw_affiliation_strings":["NTT Corporation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NTT Corporation","institution_ids":["https://openalex.org/I2251713219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025832278","display_name":"Ryo Nishikimi","orcid":"https://orcid.org/0000-0002-3638-6115"},"institutions":[{"id":"https://openalex.org/I2251713219","display_name":"NTT (Japan)","ror":"https://ror.org/00berct97","country_code":"JP","type":"company","lineage":["https://openalex.org/I2251713219"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ryo Nishikimi","raw_affiliation_strings":["NTT Corporation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NTT Corporation","institution_ids":["https://openalex.org/I2251713219"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kenji Komiya","orcid":null},"institutions":[{"id":"https://openalex.org/I2251713219","display_name":"NTT (Japan)","ror":"https://ror.org/00berct97","country_code":"JP","type":"company","lineage":["https://openalex.org/I2251713219"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kenji Komiya","raw_affiliation_strings":["NTT Corporation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NTT Corporation","institution_ids":["https://openalex.org/I2251713219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034538103","display_name":"Tomoharu Iwata","orcid":"https://orcid.org/0000-0003-4425-1971"},"institutions":[{"id":"https://openalex.org/I2251713219","display_name":"NTT (Japan)","ror":"https://ror.org/00berct97","country_code":"JP","type":"company","lineage":["https://openalex.org/I2251713219"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomoharu Iwata","raw_affiliation_strings":["NTT Corporation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NTT Corporation","institution_ids":["https://openalex.org/I2251713219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061465935","display_name":"Kunio Kashino","orcid":null},"institutions":[{"id":"https://openalex.org/I2251713219","display_name":"NTT (Japan)","ror":"https://ror.org/00berct97","country_code":"JP","type":"company","lineage":["https://openalex.org/I2251713219"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kunio Kashino","raw_affiliation_strings":["NTT Corporation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NTT Corporation","institution_ids":["https://openalex.org/I2251713219"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I2251713219"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11450","display_name":"Model-Driven Software Engineering Techniques","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1712","display_name":"Software"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11450","display_name":"Model-Driven Software Engineering Techniques","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1712","display_name":"Software"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.907800018787384,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.7250576019287109},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5862674713134766},{"id":"https://openalex.org/keywords/economics","display_name":"Economics","score":0.09365111589431763}],"concepts":[{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.7250576019287109},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5862674713134766},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.09365111589431763},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icassp49660.2025.10890074","is_oa":false,"landing_page_url":"https://doi.org/10.1109/icassp49660.2025.10890074","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICASSP 2025 - 2025 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1902027874","https://openalex.org/W2006554089","https://openalex.org/W2045512849","https://openalex.org/W2066350599","https://openalex.org/W2112796928","https://openalex.org/W2144359569","https://openalex.org/W2295124130","https://openalex.org/W2337340335","https://openalex.org/W2747877289","https://openalex.org/W2750458177","https://openalex.org/W2770880161","https://openalex.org/W2785668899","https://openalex.org/W2793370606","https://openalex.org/W2797520557","https://openalex.org/W2802141866","https://openalex.org/W2889326414","https://openalex.org/W2927507212","https://openalex.org/W2949067670","https://openalex.org/W2963318411","https://openalex.org/W2969422528","https://openalex.org/W2983296376","https://openalex.org/W2993894543","https://openalex.org/W3011619351","https://openalex.org/W3023058184","https://openalex.org/W3043574641","https://openalex.org/W3087547719","https://openalex.org/W4200431538","https://openalex.org/W4205293427","https://openalex.org/W4311375103","https://openalex.org/W4312379919","https://openalex.org/W4393147756","https://openalex.org/W6674845286","https://openalex.org/W6680012447","https://openalex.org/W6684785420","https://openalex.org/W6739076403","https://openalex.org/W6748854608","https://openalex.org/W6751264767","https://openalex.org/W6755383511","https://openalex.org/W6762819970","https://openalex.org/W6793943280","https://openalex.org/W6795445251","https://openalex.org/W6838957203","https://openalex.org/W6852771608","https://openalex.org/W7038517902"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2365264209","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W962203960","https://openalex.org/W4396701345","https://openalex.org/W2376932109"],"abstract_inverted_index":{"This":[0],"paper":[1],"proposes":[2],"a":[3,10,58,100,103,153,204,226],"method":[4,154,206,232],"for":[5,102],"embedding":[6,148],"diffusion":[7,22,130,144,166,183,192,222],"potentials":[8],"into":[9,85,123],"hyperbolic":[11,147,195],"space":[12],"in":[13,26,38,57,92,143,156,191,199,213,237],"order":[14,214],"to":[15,49,66,81,163,215],"visualize":[16],"the":[17,32,39,51,86,93,107,116,129,209,238],"differentiation":[18],"structure":[19,109,118],"consisting":[20,220],"of":[21,35,41,53,72,88,95,211,221,240],"and":[23,115,126,132,146,167,194,202,223],"branching":[24,157,168,200],"inherent":[25],"high-dimensional":[27,74],"data.":[28],"In":[29,177],"recent":[30],"years,":[31],"rapid":[33],"development":[34],"single-cell":[36],"sequencing":[37],"field":[40],"biological":[42],"information":[43],"processing":[44],"has":[45,149],"made":[46],"it":[47],"possible":[48],"observe":[50],"evolution":[52],"gene":[54],"expression":[55,235],"levels":[56],"snapshot-like":[59],"manner":[60],"as":[61,139,152],"cells":[62],"grow":[63],"from":[64],"birth":[65],"each":[67],"organ":[68],"or":[69],"tissue.":[70],"Visualization":[71],"such":[73,96],"(gene":[75],"pattern":[76],"dimension)":[77],"data":[78,236],"is":[79,99],"expected":[80],"provide":[82],"important":[83],"insights":[84],"mechanisms":[87],"cell":[89,242],"differentiation.":[90],"Therefore,":[91],"visualization":[94,140,205],"data,":[97],"there":[98],"need":[101],"system":[104],"that":[105,110,119,161,207],"emphasizes":[106],"\"diffusion\"":[108],"gradually":[111],"shifts":[112],"with":[113],"time":[114],"\"branching\"":[117],"broadly":[120],"branches":[121],"off":[122],"individual":[124],"organs":[125],"tissues.":[127],"Conventionally,":[128],"map":[131],"its":[133,186],"extension":[134],"PHATE":[135],"have":[136,171],"been":[137,150],"developed":[138],"methods":[141,160],"specializing":[142,155],"structures,":[145,193,201],"used":[151],"structures.":[158],"However,":[159],"attempt":[162],"explicitly":[164],"capture":[165,217],"structures":[169,219],"simultaneously":[170],"not":[172],"yet":[173],"received":[174],"much":[175],"attention.":[176],"this":[178],"paper,":[179],"we":[180,229],"focus":[181],"on":[182],"mapping":[184],"(and":[185],"extension,":[187],"PHATE),":[188],"which":[189,197],"specializes":[190,198],"embedding,":[196],"propose":[203],"combines":[208],"advantages":[210],"both":[212],"better":[216],"differentiaion":[218],"branching.":[224],"As":[225],"symbolic":[227],"example,":[228],"demonstrate":[230],"our":[231],"using":[233],"gene-cell":[234],"context":[239],"single":[241],"analysis.":[243]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
