{"id":"https://openalex.org/W4392909568","doi":"https://doi.org/10.1109/icassp48485.2024.10446401","title":"Nebnet:Exploiting Node-Edge Bi-Level Network for Gene Expression Prediction","display_name":"Nebnet:Exploiting Node-Edge Bi-Level Network for Gene Expression Prediction","publication_year":2024,"publication_date":"2024-03-18","ids":{"openalex":"https://openalex.org/W4392909568","doi":"https://doi.org/10.1109/icassp48485.2024.10446401"},"language":"en","primary_location":{"id":"doi:10.1109/icassp48485.2024.10446401","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/icassp48485.2024.10446401","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101432696","display_name":"Cui Chen","orcid":"https://orcid.org/0000-0002-2138-8804"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cui Chen","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,China","School of Computer Science and Engineering, Central South University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101841981","display_name":"Zuping Zhang","orcid":"https://orcid.org/0000-0002-3295-2861"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zuping Zhang","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,China","School of Computer Science and Engineering, Central South University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101346045","display_name":"Panrui Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Panrui Tang","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,China","School of Computer Science and Engineering, Central South University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101898221","display_name":"Junyu Zhang","orcid":"https://orcid.org/0000-0002-2631-0192"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junyu Zhang","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,China","School of Computer Science and Engineering, Central South University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03222925,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"30","issue":null,"first_page":"4885","last_page":"4889"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.629901111125946},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6191396117210388},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.5992671251296997},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4606693983078003},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.35738375782966614},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35543662309646606},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2056683599948883},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16270822286605835},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07348281145095825}],"concepts":[{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.629901111125946},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6191396117210388},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.5992671251296997},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4606693983078003},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.35738375782966614},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35543662309646606},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2056683599948883},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16270822286605835},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07348281145095825},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/icassp48485.2024.10446401","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/icassp48485.2024.10446401","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ICASSP 2024 - 2024 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1583837637","https://openalex.org/W2093882311","https://openalex.org/W2471536144","https://openalex.org/W2964015378","https://openalex.org/W3036882247","https://openalex.org/W3094217342","https://openalex.org/W3119379269","https://openalex.org/W3187966659","https://openalex.org/W3196139316","https://openalex.org/W4286795917","https://openalex.org/W4294558607","https://openalex.org/W4312977443","https://openalex.org/W4319299885","https://openalex.org/W4385656546","https://openalex.org/W6726873649","https://openalex.org/W6736685754","https://openalex.org/W6738964360","https://openalex.org/W6797464607"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W3129895999","https://openalex.org/W2328518092","https://openalex.org/W3101249758","https://openalex.org/W2382079200","https://openalex.org/W2111375262","https://openalex.org/W2374091470","https://openalex.org/W4388218547","https://openalex.org/W2379703849"],"abstract_inverted_index":{"Spatial":[0],"Transcriptomics":[1],"(ST)":[2],"has":[3,20],"made":[4],"great":[5],"progress":[6],"in":[7,42,56],"breast":[8,108],"cancer":[9,109],"due":[10],"to":[11,25,50],"it":[12],"captures":[13],"gene":[14,40,77,122],"expression":[15,41,78,123],"with":[16],"fine-grained":[17],"spots.":[18],"It":[19],"always":[21],"been":[22],"low-throughout":[23],"owing":[24],"reliance":[26],"on":[27,38,46,105],"special":[28],"and":[29],"pricey":[30],"technologies.":[31],"Recently,":[32],"numerous":[33],"types":[34],"of":[35,119],"models":[36],"focus":[37],"predicting":[39],"windows":[43,63],"(i.e.,":[44],"spots)":[45],"tissue":[47,81],"images,":[48],"aiming":[49],"provide":[51],"alternative":[52],"ST":[53],"data.":[54],"However,":[55],"these":[57],"models,":[58],"the":[59,128],"interrelation":[60],"information":[61,88],"between":[62],"is":[64,136],"not":[65],"well":[66],"considered.":[67],"We":[68],"propose":[69],"a":[70],"Node-Edge":[71],"Bi-level":[72],"Network":[73],"(NebNet":[74],")":[75],"for":[76,121],"prediction":[79],"within":[80],"slide":[82],"images.":[83],"Our":[84],"model":[85,131],"learns":[86],"inter-relation":[87],"among":[89],"windows,":[90],"by":[91,132],"using":[92],"our":[93,113],"message":[94],"passing":[95],"mechanism.":[96],"Using":[97],"NebNet,":[98],"without":[99],"any":[100],"additional":[101],"setting,":[102],"experiments":[103],"conducted":[104],"10x":[106],"Genomics":[107],"data":[110],"show":[111],"that":[112],"NebNet":[114],"achieves":[115],"an":[116],"impressive":[117],"PCC@S":[118],"8.26":[120],"prediction.":[124],"This":[125],"performance":[126],"exceeds":[127],"current":[129],"state-of-the-art":[130],"nearly":[133],"6.6%.":[134],"Code":[135],"available":[137],"at":[138],"https://github.com/biyecc/NebNet.":[139]},"counts_by_year":[],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
